BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0214.0009.p (972 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 1658 0.0 gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 1102 0.0 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 1658 bits (4294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 792/976 (81%), Positives = 862/976 (88%), Gaps = 32/976 (3%) Query: 1 MTGIQALIRLPMLQRQHDLQAGLNTAGYVTGYRGSPLGTVDQTAAKAKKYLDAAHVKFHP 60 MTGIQAL+RLPMLQRQ+D +AGLNTAG++TGYRGSPLG VDQTA KA+KYL+A +KFHP Sbjct: 31 MTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAVDQTAEKARKYLEAKQIKFHP 90 Query: 61 GMNEDLAATAVWGTQQVNMFPGAQYDGVFSLWYGKGPGV--------------------- 99 GMNEDLAAT+VWGTQQVN+F GAQYDGVFSLWYGKGPGV Sbjct: 91 GMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVDRCGDVFKHANMAGTSRHGGV 150 Query: 100 --IAGDDHAAKSSTTAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMSRYTGLWVSLK 157 IAGDDHAAKSST AHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMSRYTGLWV++K Sbjct: 151 LVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMSRYTGLWVAMK 210 Query: 158 CVTDIVESGMSVEIDPQRVQPVIPTDFELPPGGVNIRQPDTVLEQETRMNVYKWYAALAY 217 CVTD+VESGMSV IDP+RVQ +P DFELPP G+NIRQPDTVL QE RM YKWYAALAY Sbjct: 211 CVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPDTVLGQEARMINYKWYAALAY 270 Query: 218 ARVNKLNQIIWDSPRARIGIVTAGKSYLDTRQALYDLGIDEQIARDIGIRLYKIGMTWPL 277 AR NKLN+IIWDSPRARIGI+TAGKSYLDTRQAL DLGIDEQ ARDIGIRLYK+GMTWPL Sbjct: 271 ARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDLGIDEQAARDIGIRLYKVGMTWPL 330 Query: 278 EAEGVREFAQGLDEILVVEEKRQILEYQIKEELYNWRDDVRPRVVGKFDDTGEWSGSPRE 337 EAEGVREFAQGLDEILVVEEKRQILEYQ+KEELYNWRDDVRPRVVGKFDDTGEWSGS RE Sbjct: 331 EAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPRVVGKFDDTGEWSGSQRE 390 Query: 338 GHGNWLLPATYELSPAQIARAIATRISKYYAGHPIEQRVKARIAFLEAKEATLNVSTKPD 397 GHGNWLLPATYEL+PAQIARAIATRIS+Y+AGHP+EQ+V+AR+A+LEAKEATLN+S+KPD Sbjct: 391 GHGNWLLPATYELNPAQIARAIATRISRYFAGHPVEQQVRARVAYLEAKEATLNISSKPD 450 Query: 398 PNKDRIPHFCSGCPHNTSTKLPDGSRALAGIGCHYMVTWMDRESTIFSHMGGEGVTWVGQ 457 P+KDRIPHFCSGCPHNTSTKLP+GSR LAGIGCHYMVTWMDRE+ +F+HMGGEGVTWVGQ Sbjct: 451 PDKDRIPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMVTWMDRETKLFTHMGGEGVTWVGQ 510 Query: 458 APFTSEKHVFSNLGDGTYFHSGLLAVRAAVAGKVNMTYKILYNDAVAMTGGLXILYNDAV 517 APFT EKHVF+NLGDGTYFHSGLLAVRA+VA KVN+TYKILYNDAVAMTGG Sbjct: 511 APFTDEKHVFANLGDGTYFHSGLLAVRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDP 570 Query: 518 AMTG------GVRPIIVVTDEPDKYPAGTPWAEGVTIRHRSELDAVQRELREVPGVSAMI 571 AM VRPIIVVTDEPDKYP GT WAEGVTIRHRSELDAVQRELRE PGVSAMI Sbjct: 571 AMISRQLAAENVRPIIVVTDEPDKYPVGTQWAEGVTIRHRSELDAVQRELREQPGVSAMI 630 Query: 572 YDQTCASEKRRRRKRDAYPDPAKRAVINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQI 631 YDQTCASEKRRRRKR+AYPDPAKRAVINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQI Sbjct: 631 YDQTCASEKRRRRKRNAYPDPAKRAVINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQI 690 Query: 632 NQSSCNKDYSCVNGFCPSFVTVEGGKLKKAKRVAVEKTEAAAQGPTLPEPQLPAMGDTYG 691 NQSSCNKDYSCVNGFCPSFVTVEGG+LKK R + A P+LPEP LP + YG Sbjct: 691 NQSSCNKDYSCVNGFCPSFVTVEGGQLKKPARAQADVGPAL---PSLPEPVLPGLAQPYG 747 Query: 692 IVVTGIGGTGVITIGQILAMAAHVEGKACSVLDMSGLAQKGGPVMSHVRLSERADDLYST 751 I+VTG+GGTGVITIGQI+AMAAHVEG+ACSVLDMSGLAQKGGPVMSHVR++E A ++ST Sbjct: 748 ILVTGVGGTGVITIGQIIAMAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEDAAHIHST 807 Query: 752 RVGTGAADLVIGCDVIVTASRDALSRMGEGRTHAAVNATRMPTAAFVRNPDWQFPAESAE 811 RVGTG ADLVIGCDVIVTASRDALSRMGEGRTHAAVN+T+MPTAAFVRNPDWQFP S+E Sbjct: 808 RVGTGMADLVIGCDVIVTASRDALSRMGEGRTHAAVNSTQMPTAAFVRNPDWQFPTASSE 867 Query: 812 GSIQSACGKERVALIDAGNIATALMGDAIATNMFMLGYAWQRGWVPLSEGAILKAIELNA 871 G I ACG++ ++L+DAG IATALMGDAIATNMFMLGYAWQ+GWVPLSE A+L+AIELNA Sbjct: 868 GEIARACGRDNLSLVDAGRIATALMGDAIATNMFMLGYAWQKGWVPLSEAALLRAIELNA 927 Query: 872 LSVEFNKQAFGWGRAAAHDADMVAQAARRNGMTAQVIDFKRPPSLEEVLARRIDFLTHYQ 931 L VEFNKQAF WGRAAAHD V AA RNGM+AQVI+FKR P+L+E++ RR+ FLT Y Sbjct: 928 LQVEFNKQAFAWGRAAAHDVAFVLAAAGRNGMSAQVIEFKRTPTLDELVERRVAFLTDYL 987 Query: 932 NAAYARQYSDFVARAR 947 NAAYAR Y DFV + R Sbjct: 988 NAAYARSYRDFVEQVR 1003 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/976 (56%), Positives = 698/976 (71%), Gaps = 56/976 (5%) Query: 1 MTGIQALIRLPMLQRQHDLQAGLNTAGYVTGYRGSPLGTVDQTAAKAKKYLDAAHVKFHP 60 ++GIQAL+RLP+LQ+ D AGLNTAG+++GYRGSPLG +D+ A+ +L A VKF P Sbjct: 32 LSGIQALVRLPLLQQIRDRAAGLNTAGFISGYRGSPLGGLDEALWHAQPHLAAHRVKFQP 91 Query: 61 GMNEDLAATAVWGTQQVNMFPGAQYDGVFSLWYGKGPGV--------------------- 99 G+NED+AATAVWGTQQV + + YDGV+++WYGKGPGV Sbjct: 92 GVNEDMAATAVWGTQQVKLIGPSDYDGVYAMWYGKGPGVDRCGDVLKHMNHAGTSAHGGV 151 Query: 100 --IAGDDHAAKSSTTAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMSRYTGLWVSLK 157 +AGDDH A SST HQS+HI A IP+LYP +VQEYLD GLHGWAMSRY+G V K Sbjct: 152 LLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQEYLDLGLHGWAMSRYSGCVVGFK 211 Query: 158 CVTDIVESGMSVEIDPQRVQPVIPTDFELPPGGVNIRQPDTVL-----EQETRMNVYKWY 212 + D VES SV+ DP RVQ +P+DF +P GG+N R L +QE M YK Y Sbjct: 212 ALADTVESSASVDADPFRVQIRLPSDFVMPEGGLNARLSTDTLGVQARKQEALMQDYKIY 271 Query: 213 AALAYARVNKLNQIIWDSPRARIGIVTAGKSYLDTRQALYDLGIDEQIARDIGIRLYKIG 272 AALAYAR N+LN+++ DSP+AR+GI+ +GKSYLD +AL +LGIDE A +IG+RL+K+ Sbjct: 272 AALAYARANRLNRVMIDSPKARLGIIASGKSYLDVLEALSELGIDEAFAAEIGLRLFKVS 331 Query: 273 MTWPLEAEGVREFAQGLDEILVVEEKRQILEYQIKEELYNWRDDVRPRVVGKFDDTGEWS 332 M WPLE +GVREFAQGLDEILVVEEKRQ++EYQ+KE+LYNWRDDVRPRV+GKFD+ GEW Sbjct: 332 MPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWV 391 Query: 333 GSPREGHGNWLLPATYELSPAQIARAIATRISKYYAGHPIEQRVKARIAFLEAKEATLN- 391 +PR G WLL + + S AQIAR IA RI++++ I KAR+AFL+AK+A L+ Sbjct: 392 -APR---GEWLLTSKADFSVAQIARVIAARIARFHTSDLI----KARLAFLDAKDAVLSK 443 Query: 392 -VSTKPDPNKDRIPHFCSGCPHNTSTKLPDGSRALAGIGCHYMVTWMDRE-STIFSHMGG 449 V+T P P ++CSGCPHN+ST++P+GS ALAGIGCH M T + E + + +HMGG Sbjct: 444 AVNTPPRP-----AYYCSGCPHNSSTRVPEGSFALAGIGCHVMATAIYPEFNKLTTHMGG 498 Query: 450 EGVTWVGQAPFTSEKHVFSNLGDGTYFHSGLLAVRAAVAGKVNMTYKILYNDAVAMTGGL 509 EG W+GQAPF+ HVF+NLGDGTYFHSG LA+RAAVA KVNMTYKILYNDAVAMTGG Sbjct: 499 EGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAAKVNMTYKILYNDAVAMTGGQ 558 Query: 510 XILYNDAVAMTG------GVRPIIVVTDEPDKYPAGTPWAEGVTIRHRSELDAVQRELRE 563 + +V M GV+ I +V+++P +Y + VT+ R ++DAVQRELRE Sbjct: 559 PVDGTVSVPMIAQQMAAEGVQRIALVSEDPGRYADRSSLPAAVTVHDRKDMDAVQRELRE 618 Query: 564 VPGVSAMIYDQTCASEKRRRRKRDAYPDPAKRAVINEAVCEGCGDCSVQSNCLSVEPLET 623 +PGV+ +IYDQTCA+EKRRRRK+ YPDP +R IN AVCEGCGDC VQSNC S+ PLET Sbjct: 619 LPGVTVIIYDQTCAAEKRRRRKKGDYPDPNQRLFINAAVCEGCGDCGVQSNCTSILPLET 678 Query: 624 EFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGKLKKAKRVAVEKTEAAAQGPTLPEPQL 683 + GRKR I+QSSCNKDYSCV GFCPSFVTV GGKL+K+ R V + E LP+P L Sbjct: 679 DLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLRKS-RTGVSRQEERDDFGLLPQPVL 737 Query: 684 PAMGDTYGIVVTGIGGTGVITIGQILAMAAHVEGKACSVLDMSGLAQKGGPVMSHVRLSE 743 PA + I++ GIGGTGVITIG ++ MAAH+EGK SVLDM+G++QK G V SHVR++ Sbjct: 738 PACDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQKNGSVTSHVRIAA 797 Query: 744 RADDLYSTRVGTGAADLVIGCDVIVTASRDALSRMGEGRTHAAVNATRMPTAAFVRNPDW 803 R D + + R+ TG ADLV+GCD++ + DA+S+M GRT A VN + P F RNPDW Sbjct: 798 RRDAIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAVVNLHQQPPGQFARNPDW 857 Query: 804 QFPAESAEGSIQSACGKERVALIDAGNIATALMGDAIATNMFMLGYAWQRGWVPLSEGAI 863 +FP E + I + G++ IDA +ATALMGD+IATN+FMLGYAWQRG +PL+E ++ Sbjct: 858 EFPVEEVKALIVESVGQQ-ADFIDATRLATALMGDSIATNLFMLGYAWQRGELPLTEASL 916 Query: 864 LKAIELNALSVEFNKQAFGWGRAAAHDADMVAQAARRNGMTAQVIDFKRPPSLEEVLARR 923 L+AIELN ++V+ NK AF WGR AA D V Q A + AQ + P SL++++ RR Sbjct: 917 LRAIELNGVAVQANKTAFAWGRRAAVDLARVEQIA----VPAQPVLLHLPQSLDQLIKRR 972 Query: 924 IDFLTHYQNAAYARQY 939 + LT YQ+AAYA Q+ Sbjct: 973 VSLLTDYQDAAYAAQF 988 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,119,548 Number of extensions: 132943 Number of successful extensions: 403 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 387 Number of HSP's successfully gapped: 2 Length of query: 972 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 878 Effective length of database: 1,174,780 Effective search space: 1031456840 Effective search space used: 1031456840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)