BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0214.0006.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313562|ref|YP_003777654.1| polypeptide chain release facto...   198   3e-52

>gi|300313562|ref|YP_003777654.1| polypeptide chain release factors
           methylase [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  198 bits (503), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 113/157 (71%), Positives = 126/157 (80%)

Query: 9   AGASLGDALKNAPLDTLENRILLGHALQLSRIQLITQSERLLTDDEAVRLTALYRRRLQG 68
           AG +L   LK APLD LENRILL HAL+L+R+QLITQSER L+  EA  L AL  RRL+G
Sbjct: 8   AGCTLATVLKTAPLDPLENRILLCHALRLTRVQLITQSERQLSAAEAETLAALLARRLRG 67

Query: 69  EPIAYIVGEREFFGLAMAVTPDVLIPRPDTELLVELALERLPQQGKALDMGTGSGAIAVA 128
           EPIAYIVG+REF+GL + V+PDVLIPRPDTELLVELALERLPQ G ALDMGTGSGAIAVA
Sbjct: 68  EPIAYIVGQREFYGLDLRVSPDVLIPRPDTELLVELALERLPQGGSALDMGTGSGAIAVA 127

Query: 129 IAHTRPDADMTALDVSEGALKVAASNAQRHGAKVRLF 165
           IAHTRPDA +TALD S  AL +A  NA  H  +VRL 
Sbjct: 128 IAHTRPDAQVTALDASPAALAIARENASTHQVRVRLL 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 686,457
Number of extensions: 27394
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)