BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0213.0010.p (394 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Her... 348 5e-97 gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Her... 178 7e-46 gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Her... 168 6e-43 gi|300309830|ref|YP_003773922.1| ATP-dependent DNA helicase [Her... 62 9e-11 >gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 510 Score = 348 bits (892), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 173/206 (83%), Positives = 184/206 (89%), Gaps = 1/206 (0%) Query: 65 DEADRMLDMGFIEDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNAPQIIQIAGSAT 124 DEADRMLDMGFI+DIEKIVAATPATRQTMLFSATLDGVVGNMAKRITN P IQIA S+T Sbjct: 178 DEADRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSST 237 Query: 125 KHENIAQRVHFVDDLSHKNRLLDFLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAA 184 +HENI QRVHFVDDLSHKNRLLD LLRD ++DQAV+FTATKRDADTIADRLNIAGFAAAA Sbjct: 238 RHENIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAA 297 Query: 185 LHGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFPEDYVHRIG 244 LHGDMHQGARNRTL+ +RRGQVR+LVATDVAARGIDVPGITHVFNYDLPKF EDYVHRIG Sbjct: 298 LHGDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIG 357 Query: 245 RTGRAG-AGLPCPQCRHIGCNRVGRI 269 RTGRAG G+ H +V RI Sbjct: 358 RTGRAGRNGVAISLVNHAEGMQVKRI 383 Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 54/65 (83%), Positives = 62/65 (95%) Query: 1 MTFETLGLHPSIIKALTDSGYTAPTPVQEQAIPAAIAGKDLLVSSQTGSGKTAAFMLPSL 60 MTFE LGL+PSIIKALT++GYT+PTPVQE+AIPAAI+G+DLLVSSQTGSGKTAAFMLPSL Sbjct: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 Query: 61 HKFXD 65 H+ D Sbjct: 61 HQLAD 65 >gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 178 bits (451), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 91/187 (48%), Positives = 122/187 (65%), Gaps = 1/187 (0%) Query: 65 DEADRMLDMGFIEDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNAPQIIQIAGSAT 124 DEADRMLDMGFI DI K++AA P RQ +LFSAT + +A + N P +I++A + Sbjct: 157 DEADRMLDMGFIRDIRKVLAALPPKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNS 216 Query: 125 KHENIAQRVHFVDDLSHKNRLLDFLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAA 184 E IAQ++H VD K+ +L L++ Q +VFT TK A+ + ++L G A A Sbjct: 217 TVEVIAQKIHPVDR-DKKHPMLAHLIKTHQWKQVLVFTRTKHGANKLVEQLGRDGITAMA 275 Query: 185 LHGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFPEDYVHRIG 244 +HG+ Q AR + L + G++ L+ATD+AARGID+ + HV NYDLP PEDYVHRIG Sbjct: 276 IHGNKSQSARTKALAEFKDGKLTALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIG 335 Query: 245 RTGRAGA 251 RTGRAGA Sbjct: 336 RTGRAGA 342 Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 47/63 (74%) Query: 1 MTFETLGLHPSIIKALTDSGYTAPTPVQEQAIPAAIAGKDLLVSSQTGSGKTAAFMLPSL 60 M+F LGL I++A+++ GYT+PTP+Q QA+PA ++G DLL +QTG+GKTA F LP L Sbjct: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 HKF 63 + Sbjct: 61 QRL 63 >gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] Length = 487 Score = 168 bits (426), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 86/187 (45%), Positives = 118/187 (63%), Gaps = 1/187 (0%) Query: 65 DEADRMLDMGFIEDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNAPQIIQIAGSAT 124 DEADRMLDMGF+ D+++I+ P RQ +LFSAT + +A N P I++A S Sbjct: 173 DEADRMLDMGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNA 232 Query: 125 KHENIAQRVHFVDDLSHKNRLLDFLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAA 184 EN+ Q ++ V++ + K + F++R + Q +VF+ TK A +A L G A+A Sbjct: 233 TAENVTQTIYKVEE-AAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASA 291 Query: 185 LHGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFPEDYVHRIG 244 +HGD Q R L+ ++GQ+ VLVATDVAARG+D+ + V NYDLP EDYVHRIG Sbjct: 292 IHGDKTQSERMAALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIG 351 Query: 245 RTGRAGA 251 RTGRAGA Sbjct: 352 RTGRAGA 358 Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 44/65 (67%) Query: 3 FETLGLHPSIIKALTDSGYTAPTPVQEQAIPAAIAGKDLLVSSQTGSGKTAAFMLPSLHK 62 FE GL P I+KAL + GY PTP+Q QAIP + G+D++ ++QTG+GKTA F LP + + Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77 Query: 63 FXDEA 67 A Sbjct: 78 LLQHA 82 >gi|300309830|ref|YP_003773922.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] Length = 618 Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 53/119 (44%) Query: 132 RVHFVDDLSHKNRLLDFLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQ 191 R V+ + + +LLDF+ + D +V+ +++ + AD L G A A H M Sbjct: 218 RYQIVEKANGRKQLLDFIKSEHPEDAGIVYCLSRKKVEETADFLRSEGINALAYHAGMDY 277 Query: 192 GARNRTLDGMRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFPEDYVHRIGRTGRAG 250 R R V+VAT GID P + V + DLPK E Y GR GR G Sbjct: 278 AQRTANQARFLREDKIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDG 336 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,195,642 Number of extensions: 49327 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 7 Length of query: 394 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 307 Effective length of database: 1,207,925 Effective search space: 370832975 Effective search space used: 370832975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 131 (55.1 bits)