BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0213.0009.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312724|ref|YP_003776816.1| paraquat-inducible B protein [H...   293   9e-81

>gi|300312724|ref|YP_003776816.1| paraquat-inducible B protein
           [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  293 bits (750), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 154/249 (61%), Positives = 179/249 (71%), Gaps = 5/249 (2%)

Query: 1   VFYRRIKVGQVAAYDLDQDGRGVTLRIFINAPYDKFVGISSRFWHASGFDMQINASGFKL 60
           +FYRRIKVGQV AYDLD DGRGVTLRIF+NAPYDKFV  +SRFWHASGFDM++NASGFKL
Sbjct: 186 IFYRRIKVGQVVAYDLDADGRGVTLRIFVNAPYDKFVTQTSRFWHASGFDMELNASGFKL 245

Query: 61  HTQSLATVVLGGIAFKSIDDLDSPAPARENTSFRLAEDEAAAMKEPDGRSQTVLLYFNQS 120
           HTQ+LATVVLGGIAF+  D+    APA+E   + L EDE+AAMKEPDG  QT LLYF+QS
Sbjct: 246 HTQALATVVLGGIAFRDRDEDRVSAPAKEGAEYALVEDESAAMKEPDGVPQTALLYFDQS 305

Query: 121 LRGLEPGAAVDFRGVVLGEVKSIGIEYNDKTREFVMPVVVELYPDRLGRKFNEQQ-ESRY 179
           LRGL+PGA VDFRGVVLGEVKSIG+EY+    EF MPVVV++YP+RLGR+F E+  E R 
Sbjct: 306 LRGLQPGATVDFRGVVLGEVKSIGVEYDKARGEFRMPVVVQIYPERLGRRFQEETGEQRR 365

Query: 180 TPRQRLKYLVSRGLRAQLXAMRDARKTLSAAERTLSEDAPLQQDVRQTMQELSRAAASIR 239
           +    L+ LV RGLRAQL         L  A     +  P Q D  +T  EL     S+ 
Sbjct: 366 SNAHLLRTLVKRGLRAQLRNGNLLTGQLYVAIDFFPKAKPAQIDPDKTPLELPTIPGSL- 424

Query: 240 VLTDYLQQH 248
              D LQQ 
Sbjct: 425 ---DELQQQ 430



 Score =  114 bits (284), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/60 (90%), Positives = 60/60 (100%)

Query: 199 AMRDARKTLSAAERTLSEDAPLQQDVRQTMQELSRAAASIRVLTDYLQQHPESLIRGKQE 258
           AM+DARKTL+AAERTLS+DAPLQQD+RQTMQELS+AAASIR+LTDYLQQHPESLIRGKQE
Sbjct: 482 AMKDARKTLNAAERTLSDDAPLQQDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQE 541


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 760,289
Number of extensions: 30696
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)