BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0213.0004.p
         (388 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312731|ref|YP_003776823.1| hypothetical protein Hsero_3435...   496   e-142

>gi|300312731|ref|YP_003776823.1| hypothetical protein Hsero_3435
           [Herbaspirillum seropedicae SmR1]
          Length = 457

 Score =  496 bits (1278), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/394 (61%), Positives = 285/394 (72%), Gaps = 25/394 (6%)

Query: 15  IADDFLRTREYSMILATPLSDEDCGAQSMPDASPVKWHLAHTSWFFETFILEVYEPDFAP 74
           + D + R R  S+++A PLS EDC  Q+MPDASPVKWHLAHT+WFFETF+LE +E  F P
Sbjct: 47  LGDRYRRLRRQSLVIAEPLSPEDCCVQAMPDASPVKWHLAHTTWFFETFLLERFESGFKP 106

Query: 75  FHPAFRVLFNSYYEGVGDKHPRPQRGMLTRPSLAEIRAYRANVDLRMQALLLSDICDDNC 134
           FHP FR+LFNSYYEGVG++ PRPQRGMLTRP+LAE+ AYR  VD RM  LLL D  D N 
Sbjct: 107 FHPQFRMLFNSYYEGVGERFPRPQRGMLTRPALAEVLAYREQVDQRM--LLLIDALDANG 164

Query: 135 --------------------LRLLELGMQHEQQHQELILTDVKHLLSLNPLKPAYLPRAL 174
                               L LLELGMQHEQQHQEL+LTD+K LLSLNPL+PAY P   
Sbjct: 165 ASTSAVAAGGGDAQPQLAQFLSLLELGMQHEQQHQELMLTDIKMLLSLNPLQPAYQPLPE 224

Query: 175 QAM---PVQTELEWNTFDAGVVEIGYRNGGFCFDNELPSHRQFVESFAIGSRLISNIEYL 231
                 P +  L+W+  +AGVVEIG+   GFCFDNE P HRQFVE++   SRL++N EYL
Sbjct: 225 SVPLDDPAELALQWHRIEAGVVEIGHAGPGFCFDNETPRHRQFVEAYQCASRLVNNAEYL 284

Query: 232 MFVEQGGYENPAYWLSAGWDWRSSNQIAHPLYWQRQDDGAWREFTLHGMLPLDPHAAVLH 291
            F++ GGY++P+ WL+ GWDW+    + HPLYW+R   G W EFT +G+  L PH A +H
Sbjct: 285 DFIQAGGYQDPSLWLAEGWDWKEQLALRHPLYWRRDAQGQWSEFTEYGVQALQPHRAAVH 344

Query: 292 LSYYEADAFARWAGARLPTEAEWEYAVGELGNEGRQFFGTAWQWTSSSYAPYPGYAIPDG 351
           LSYYEADA+ARWAGARL TEAEWE+A   L   GR+FFG AWQWTSSSYAPYPG+    G
Sbjct: 345 LSYYEADAYARWAGARLLTEAEWEHAAAHLQGGGREFFGVAWQWTSSSYAPYPGFVAAAG 404

Query: 352 AVGEYNGKFMVNQYVLRGSSGATPLGHSRASYRK 385
           AVGEYNGKFMVNQYVLRGSS ATPL H+R SYR 
Sbjct: 405 AVGEYNGKFMVNQYVLRGSSSATPLNHARLSYRN 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,358,005
Number of extensions: 62429
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,207,925
Effective search space: 363585425
Effective search space used: 363585425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)