BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0213.0002.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312732|ref|YP_003776824.1| hypothetical protein Hsero_3436...   181   4e-47

>gi|300312732|ref|YP_003776824.1| hypothetical protein Hsero_3436
           [Herbaspirillum seropedicae SmR1]
          Length = 322

 Score =  181 bits (458), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 105/132 (79%)

Query: 11  DDWSENCPVRNELQDGLTAAAASISPKYFYDALGSTLFEAICALPEYYPTRTEAQIFDQH 70
           D  SE+   R EL  GLTA AA ISPKYFYD LGS LFEAICALPEYYPTRTEA IF +H
Sbjct: 12  DSLSEDRQRRAELVTGLTAPAAFISPKYFYDVLGSKLFEAICALPEYYPTRTEAAIFAEH 71

Query: 71  ADDIAATVGKGVTMIDLGAGNCAKAARLFPSLQPRQYVPIDISTEFLRDAVSGLRQKFPA 130
            D+IAA VG+   +IDLGAGNCAKAA LF +L+PRQYVP+DIS +FL+ +V+GL+++FP 
Sbjct: 72  RDEIAAAVGQDACLIDLGAGNCAKAASLFAALRPRQYVPVDISAQFLQQSVAGLQRRFPD 131

Query: 131 IPMQEIAMDFSA 142
           IPM  + MDFS+
Sbjct: 132 IPMLPLGMDFSS 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 517,582
Number of extensions: 20179
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)