BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0211.0014.p
         (346 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312230|ref|YP_003776322.1| phosphoenolpyruvate carboxylase...   201   8e-53

>gi|300312230|ref|YP_003776322.1| phosphoenolpyruvate carboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 970

 Score =  201 bits (511), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 108/133 (81%), Positives = 115/133 (86%), Gaps = 3/133 (2%)

Query: 146 RRSRARAIRNYIISHTETASDLLEVLLLQKETGLLHADAKDPSKLVELELMVIPLFETIP 205
           RR   RAIRNYIISHTET SDLLEVLLLQKETGLLH +    ++L ELELMVIPLFETIP
Sbjct: 522 RRYGERAIRNYIISHTETLSDLLEVLLLQKETGLLHIEG---NQLRELELMVIPLFETIP 578

Query: 206 DLRCAADIMEQWLSFPQVTPLIDRQGKLQEVMLGYSDSNKDGGFLTSNWELYKSENRLVE 265
           DLRCAA+IM  WLS PQV  LI + GKLQEVMLGYSDSNKDGGFLTSNWELYK+EN+LVE
Sbjct: 579 DLRCAAEIMRGWLSLPQVKGLIAKHGKLQEVMLGYSDSNKDGGFLTSNWELYKAENQLVE 638

Query: 266 LFNRAGVKLRLFH 278
           LFN AGVKLRLFH
Sbjct: 639 LFNEAGVKLRLFH 651



 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/58 (81%), Positives = 53/58 (91%), Gaps = 1/58 (1%)

Query: 1   VSEWLQEGG-SKESAKKLATLRAMYKEWPFFAALLSNMDMVLSKTDLAVASRYAGLVG 57
           VS WL++ G +KE+A++LATLRAM KEWPFFAALLSNMDMVLSKTDLAVASRYAGLV 
Sbjct: 816 VSGWLEDAGNAKEAARRLATLRAMCKEWPFFAALLSNMDMVLSKTDLAVASRYAGLVA 873


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 990,664
Number of extensions: 37543
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,212,660
Effective search space: 315291600
Effective search space used: 315291600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)