BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0211.0006.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312234|ref|YP_003776326.1| argininosuccinate lyase [Herbas...   379   e-107

>gi|300312234|ref|YP_003776326.1| argininosuccinate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 464

 Score =  379 bits (974), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/206 (94%), Positives = 200/206 (97%)

Query: 1   MAQIKGEIDGGQFEWLLDLEDVHLNIEKRLTELVGDAGKRLHTGRSRNDQVATDIRLYMR 60
           MAQIKGEI+ GQFEWLLDLEDVHLNIEKRLTELVGDAGKRLHTGRSRNDQVATDIRLYMR
Sbjct: 70  MAQIKGEIEAGQFEWLLDLEDVHLNIEKRLTELVGDAGKRLHTGRSRNDQVATDIRLYMR 129

Query: 61  AAIDDISGLLRDLRAALVDLAEQHADTILPGFTHMQVAQPITFGHHVLAYVEMFGRDAER 120
            A+DDI GLLR+LR AL+DLAEQHADTILPGFTHMQVAQPITFGHHVLAYVEMFGRDAER
Sbjct: 130 GAVDDIIGLLRELRLALLDLAEQHADTILPGFTHMQVAQPITFGHHVLAYVEMFGRDAER 189

Query: 121 MADARKRVNRLPLGAAALAGTTFPIDRLRVAKTLGFDDVCRNSLDAVSDRDFAIEFCAAA 180
           M DARKR+NRLPLGAAALAGTTFPIDRLRVAKTLGFDDVCRNSLDAVSDRDFAIEFCA A
Sbjct: 190 MIDARKRINRLPLGAAALAGTTFPIDRLRVAKTLGFDDVCRNSLDAVSDRDFAIEFCAGA 249

Query: 181 AMVMTHISRMSEELVIWMSPRVGFID 206
           A+VMTHISRMSEELVIWMSPRVGFID
Sbjct: 250 ALVMTHISRMSEELVIWMSPRVGFID 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 592,828
Number of extensions: 19588
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)