BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0210.0016.p
         (87 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription re...   151   8e-39
gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription re...   119   4e-29
gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription re...    68   2e-13

>gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  151 bits (382), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 83/87 (95%)

Query: 1   MSAQQKLAAFLVNLSSRYATRGYSASRFQLRMTREEIGNYLGLAVESVSRLLSNLKKNGV 60
           M+AQQK+AAFL+NLSSRY +RGYS++RFQLRMTREEIGNYLGLAVESVSRLL+N KK+GV
Sbjct: 169 MTAQQKMAAFLLNLSSRYMSRGYSSTRFQLRMTREEIGNYLGLAVESVSRLLTNFKKSGV 228

Query: 61  IDVSHRDLELLDLPTLRSIALGADPCS 87
           I+V+HRD+EL DLPTLR++ALG DPC+
Sbjct: 229 IEVNHRDVELCDLPTLRAVALGNDPCA 255


>gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  119 bits (299), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 71/87 (81%)

Query: 1   MSAQQKLAAFLVNLSSRYATRGYSASRFQLRMTREEIGNYLGLAVESVSRLLSNLKKNGV 60
           M A+Q+ AAFLVNLSSRYA RGYS++RFQLRMTR+++GNYLGL +ES+SRL+S  +K G+
Sbjct: 184 MRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRKQGL 243

Query: 61  IDVSHRDLELLDLPTLRSIALGADPCS 87
           + V  RD+E++DL  L+ +A G D C+
Sbjct: 244 LAVEQRDVEVVDLAALKRLAAGVDACT 270


>gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score = 67.8 bits (164), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 55/81 (67%)

Query: 3   AQQKLAAFLVNLSSRYATRGYSASRFQLRMTREEIGNYLGLAVESVSRLLSNLKKNGVID 62
           ++Q+ A FL++LS   +  G +++ F LRM+R +IG +LGL  ES+SRL+S  +K G+ID
Sbjct: 163 SEQRFAFFLLDLSRISSRCGNASTEFSLRMSRTDIGLFLGLTNESMSRLISKFRKAGLID 222

Query: 63  VSHRDLELLDLPTLRSIALGA 83
           VS R + +L   TL  +A GA
Sbjct: 223 VSVRKVRVLSPSTLEELASGA 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 225,417
Number of extensions: 6803
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 3
Length of query: 87
Length of database: 1,619,870
Length adjustment: 57
Effective length of query: 30
Effective length of database: 1,349,975
Effective search space: 40499250
Effective search space used: 40499250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)