BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0210.0014.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311851|ref|YP_003775943.1| major facilitator superfamily p...   154   8e-39

>gi|300311851|ref|YP_003775943.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  154 bits (388), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 99/118 (83%)

Query: 99  LAGAIGGAXFAGALIRRFGLGPIVLAGVALNLACALIAMASTSLPAFYVALLCLGVGWNF 158
           L G    + FAG L++R GLGP++LAG+A+NL CA++AM ST+LPAFY+ALL LGVGWNF
Sbjct: 272 LMGMYAPSFFAGRLVQRVGLGPVLLAGLAMNLGCAVVAMLSTTLPAFYLALLLLGVGWNF 331

Query: 159 MFVGGTTLLAQSYRPSERARTQGLSEFLRYAATALATLAAGPLLEHYGWSALNLAILP 216
           MFVGGTTLLAQSY PSERA+TQG SE LRYAATALATL AGPLL  +GW  LNLAILP
Sbjct: 332 MFVGGTTLLAQSYAPSERAKTQGFSELLRYAATALATLGAGPLLARFGWQTLNLAILP 389



 Score =  145 bits (365), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/93 (81%), Positives = 82/93 (88%), Gaps = 2/93 (2%)

Query: 15  TSLPDS--HGSGYRNARILAICQGLFTCAISIDLTLTALTGYQLAPDKSLATLPFALITV 72
           T+LP S    SG RNAR+LA+CQGLFTCAISIDLTLTALTG+QLAPDKSLATLPFALITV
Sbjct: 7   TALPASAPDASGARNARVLALCQGLFTCAISIDLTLTALTGWQLAPDKSLATLPFALITV 66

Query: 73  AGAVVTWFAAFLIQRLGRRLSFALGALAGAIGG 105
           AGAVVTWFAAFLIQRLGRR SF LGA +  +GG
Sbjct: 67  AGAVVTWFAAFLIQRLGRRWSFVLGAASCCVGG 99


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 600,695
Number of extensions: 18784
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)