BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0210.0012.p (347 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311850|ref|YP_003775942.1| AraC family transcription regul... 443 e-126 gi|300312798|ref|YP_003776890.1| AraC family transcription regul... 238 4e-64 gi|300313081|ref|YP_003777173.1| transcription regulator protein... 216 2e-57 gi|300313912|ref|YP_003778004.1| AraC family transcription regul... 195 4e-51 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 168 7e-43 >gi|300311850|ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 443 bits (1140), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/335 (65%), Positives = 263/335 (78%), Gaps = 13/335 (3%) Query: 16 MKPRNP-LRIALLAYPGMNLIDLSGPLQTFVSAGRVAASAGVSDPRPLYEVRVLSSRGGA 74 M P +P R+ LAY GMNL+DLSGP+Q + R+ R +Y + V+S++GG Sbjct: 1 MNPLHPPRRVVFLAYAGMNLLDLSGPMQVLATTNRLQG-------REVYRLHVVSAQGGT 53 Query: 75 LMTGAGLSVETEALEALDNL-----DIDTIIAPGGSVGERFETDPALVAWIRQHAGRARR 129 ++T AGL V T++L+ +D L D+ T+I+PGGS G++F D ALVAWIRQHA A R Sbjct: 54 ILTSAGLPVGTQSLQEMDRLLQATPDLHTLISPGGSSGDQFPLDAALVAWIRQHAQAAVR 113 Query: 130 VCSVCTGAFLLAAAGLLDGKRVTTHWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVT 189 +CSVCTGAF LA AG+LDG RVTTHWDWA LQ+++PA++VD +PI+IRQG IWTSAGVT Sbjct: 114 ICSVCTGAFHLAEAGVLDGLRVTTHWDWAQELQRRYPALQVDADPIYIRQGRIWTSAGVT 173 Query: 190 AGIDLALALVEQDYGHKVAIATARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWI 249 AGIDLALALVEQD GH AIATARQLVMFIKRPGGQSQFS PL +QS+ RFAELHAWI Sbjct: 174 AGIDLALALVEQDLGHASAIATARQLVMFIKRPGGQSQFSTPLATQSTGAGRFAELHAWI 233 Query: 250 ASNLKNDLRVENLANRVNMSPRTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLK 309 A++L +DL VENLA+R MSPRTFAR YVAE GRTPA+TVE MRLEAA RALEET LPLK Sbjct: 234 AAHLADDLHVENLAHRAGMSPRTFARLYVAETGRTPARTVELMRLEAARRALEETRLPLK 293 Query: 310 SIATETGHGEEQNLRRVFQRQLGVSPAQYRSRFSA 344 IA++ G+GEEQNLRRVF RQLGVSP QYR RF+A Sbjct: 294 RIASQAGYGEEQNLRRVFLRQLGVSPGQYRERFAA 328 >gi|300312798|ref|YP_003776890.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 238 bits (608), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 136/324 (41%), Positives = 192/324 (59%), Gaps = 14/324 (4%) Query: 24 IALLAYPGMNLIDLSGPLQTFVSAGRVAASAGVSDPRPLYEVRVLSSRGGALMTGAGLSV 83 + +A+ G +DL GP+ F A +A + Y +RV S G L T + LS+ Sbjct: 20 VVFIAFDGAEPLDLMGPIGVFSRAEELAPGS--------YALRVASVDGALLRTRSPLSL 71 Query: 84 ETEALEALDNLD--IDTIIAPGG--SVGERFETDPALVAWIRQHAGRARRVCSVCTGAFL 139 + L +++ +DT++ GG + T+ ALV W+ + +ARR+ S+CTGAF+ Sbjct: 72 A--GIVPLSSIEGRLDTVLVAGGHEQAIHQAATEVALVEWLNRRGRQARRIGSICTGAFV 129 Query: 140 LAAAGLLDGKRVTTHWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVTAGIDLALALV 199 L AAGLLDG+ VTTHW LQQ FP +VDP+ I+ G I TSAGVT GIDLALALV Sbjct: 130 LGAAGLLDGRYVTTHWAAVDLLQQYFPKAKVDPDAIYRIDGPICTSAGVTTGIDLALALV 189 Query: 200 EQDYGHKVAIATARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKNDLRV 259 D G ++A A AR LV+F+ RPG Q Q S LV+Q S F+ L W+ + + D+ V Sbjct: 190 RDDLGQEIASAIARDLVLFLHRPGRQQQISATLVAQQSAGDLFSALLVWMLDHPQEDMSV 249 Query: 260 ENLANRVNMSPRTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGE 319 LA R MSPR FAR ++ E G+ P + V +R++ ACR LE+T ++ IA +G Sbjct: 250 NALAERAAMSPRNFARRFLREVGKPPGQYVLELRIDHACRHLEKTGWSIERIAERSGLKN 309 Query: 320 EQNLRRVFQRQLGVSPAQYRSRFS 343 L RVF++ LG++PAQYR+R + Sbjct: 310 ADTLHRVFRQHLGMTPAQYRARLA 333 >gi|300313081|ref|YP_003777173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 216 bits (550), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 132/320 (41%), Positives = 185/320 (57%), Gaps = 12/320 (3%) Query: 21 PLR-IALLAYPGMNLIDLSGPLQTFVSAGRVAASAGVSDPRPLYEVRVLSSRGGALMTGA 79 PLR A L + +++D +GPL F +A R+A + LY + + S GG + + A Sbjct: 2 PLRETAFLIFADCSMLDFTGPLSAFDAANRLAG-------KTLYRLTLYSEPGGMIRSSA 54 Query: 80 GLSVETEALEALDNLDIDTIIAPGGSVGERFETDPALVAWIRQHAGRARRVCSVCTGAFL 139 G + TE + DT+I GG PAL + + A R+RR+ +CTGAF+ Sbjct: 55 GALIHTERI---GRTSFDTLIVAGGGAPREGLVSPALRRHVLRAAARSRRIAGICTGAFV 111 Query: 140 LAAAGLLDGKRVTTHWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVTAGIDLALALV 199 LAA GLLDGKR TTHW A +LQQ PA++VD + I+ R G +WTSAG++AGIDLALAL+ Sbjct: 112 LAATGLLDGKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALI 171 Query: 200 EQDYGHKVAIATARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKNDLRV 259 E D+G ++A + AR+LV++ +RPGGQSQFS L + R + +L L V Sbjct: 172 EDDHGVELARSVARELVVYHRRPGGQSQFSA-LQEMDGGSERIRRALGFAREHLHQALTV 230 Query: 260 ENLANRVNMSPRTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGE 319 + LA +S R F R + AE G+TPA+ +E MR EAA +E++ L+SIA TG G+ Sbjct: 231 DLLAEVACLSRRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGD 290 Query: 320 EQNLRRVFQRQLGVSPAQYR 339 +RR R G P R Sbjct: 291 ADRMRRACLRLFGQPPQAMR 310 >gi|300313912|ref|YP_003778004.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 195 bits (496), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 114/280 (40%), Positives = 170/280 (60%), Gaps = 7/280 (2%) Query: 62 LYEVRVLSSRGGALMTGAGLSVETEALEALDNLDIDTIIAPGGSVGERFETDPAL--VAW 119 Y + S GG L + G+ V T A + IDT + G VG E+ + A+ Sbjct: 34 FYRLHNYSVGGGELASSLGMRVTTAKAAATAS--IDTWVVCG--VGNPLESPASAEECAF 89 Query: 120 IRQHAGRARRVCSVCTGAFLLAAAGLLDGKRVTTHWDWALRLQQQFPAIEVDPEPIFIRQ 179 +++ A +ARR+ +CTG F+LA AGLL +R TTHW +A +Q++FP I+V+ + I+I Sbjct: 90 LQRAAKKARRIAGICTGGFVLAEAGLLARRRATTHWAFARAMQERFPDIQVEDDRIYIVD 149 Query: 180 GDIWTSAGVTAGIDLALALVEQDYGHKVAIATARQLVMFIKRPGGQSQFSVPLVSQSSEN 239 G +WTSAG+TAG+DLALA+V +D G + A + AR+LVM R GGQSQ S ++ + + Sbjct: 150 GPLWTSAGMTAGLDLALAMVGKDLGEEAARSVARKLVMHQHRAGGQSQHS-EMLELAPKT 208 Query: 240 ARFAELHAWIASNLKNDLRVENLANRVNMSPRTFARTYVAEQGRTPAKTVEAMRLEAACR 299 R + + NLK L VE LA + N+S R F R + +E G++PAK +E +RLEAA Sbjct: 209 DRIQDALNYARRNLKRALTVEELAEQANLSARQFTRVFTSETGQSPAKAIEGLRLEAARL 268 Query: 300 ALEETDLPLKSIATETGHGEEQNLRRVFQRQLGVSPAQYR 339 +E++ PL+ +A ETG + +++R VF R GV+P R Sbjct: 269 MIEQSRHPLEVVARETGFRDRRHMREVFLRGFGVAPQSMR 308 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 168 bits (425), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 111/349 (31%), Positives = 178/349 (51%), Gaps = 14/349 (4%) Query: 1 MSRRQAEPEKRTRPSMKPRNPLRIALLAYPGMNLIDLSGPLQTFVSAGRVAASAGVSDPR 60 M RQ++ S+K I ++ G+ L DL+ + F ++ +S + Sbjct: 18 MHSRQSKELNEDCSSVK-----HIGVIVSEGVILADLAEIAEVFFVTDKMLSS--MFSQG 70 Query: 61 PLYEVRVLSSRGGALMTGAGLSVETEALEALDNLDIDTIIAPGGSVGERFETDPALVAWI 120 Y +LS RGG + T + + + T +L+ D D+II G DP L+ W+ Sbjct: 71 NGYHFSLLSVRGGMITTSSSVQIGTLSLQHHDIRAFDSIIIADGRGNFADCNDPQLLNWL 130 Query: 121 RQHAGRARRVCSVCTGAFLLAAAGLLDGKRVTTHWDWALRLQQQFPAIEVDPEPIFIRQG 180 A A R+ ++CTG +LA AGLLD K+V HW RLQ++FP I V+P ++ Sbjct: 131 ATAALHAPRIAALCTGVLVLAEAGLLDRKKVAAHWALRDRLQREFPDIHVEPGDTLVQDQ 190 Query: 181 DIWTSAGVTAGIDLALALVEQDYG----HKVAIA-TARQLVMFIKRPGGQSQFSVPLVSQ 235 +++TSA G ++ALAL+E D G H++ + T RQ F S+ Sbjct: 191 NVFTSADSGTGAEVALALIEDDLGSSFAHRIEQSLTVRQHHQFKHSLSRGSEIRPGEKRH 250 Query: 236 SSENARFAELHAWIASNLKNDLRVENLANRVNMSPRTFARTYVAEQGRTPAKTVEAMRLE 295 SE + A + W+ ++ + + + A+ V+MS R F R + E G TP + +R+E Sbjct: 251 RSERIQKALI--WLDEHMSSSINMSEAADHVSMSERNFQREFKRETGETPHCFLTKIRIE 308 Query: 296 AACRALEETDLPLKSIATETGHGEEQNLRRVFQRQLGVSPAQYRSRFSA 344 AAC L+ETDLP++ IA G ++L R+F++ GVSP +YR + +A Sbjct: 309 AACLYLKETDLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKKENA 357 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,052,454 Number of extensions: 39891 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 6 Length of query: 347 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 261 Effective length of database: 1,212,660 Effective search space: 316504260 Effective search space used: 316504260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)