BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0210.0009.p
         (339 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...   377   e-106
gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...    85   7e-18
gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...    69   7e-13

>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score =  377 bits (968), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/227 (81%), Positives = 198/227 (87%), Gaps = 4/227 (1%)

Query: 1   MSTT-FTRQLERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDKPDDYLAGF 59
           MST  +TRQ+ERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSD+P DYLAGF
Sbjct: 3   MSTPLYTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF 62

Query: 60  PDHPHRGFETVTYMLQGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQEDGLMSG 119
           PDHPHRGFETVTYML GRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQE+GLMSG
Sbjct: 63  PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG 122

Query: 120 FQLWVNLAGRDKMTTPGYSDIPSAQIPEVTPQDGVQVRVLAGEAFGVKGAVERPTTAPLY 179
           FQLWVNLAG+DKMT PGY DIP+A IPE +PQ GV+VRVLAG AFG  GA+ R TT PLY
Sbjct: 123 FQLWVNLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATTEPLY 182

Query: 180 LDLHVQADKRLALPIPATHNAFLYVYEGELLIGQ---DQRVAAAGRF 223
           LDL ++A   LALPIPATHNAFLYVYEG L +G    + R A AGR 
Sbjct: 183 LDLALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRM 229


>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score = 85.1 bits (209), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 97/197 (49%), Gaps = 17/197 (8%)

Query: 23  GVSLTRVLTHDLQRRLDPFLMLDAFHSDKPDDYLAGFPD-----HPHRGFETVTYMLQGR 77
           G  + R+L     R + PF+  D      P ++ AG  +     HPH G  TVTY+  G 
Sbjct: 16  GFPVRRLLPAAAARTVGPFVFFDHM---GPVEFDAGTTEGDVRPHPHIGLATVTYLFSGA 72

Query: 78  MRHRDNAGNEGLLEPGGMQWMTAGRGLVHSE-LPE---QEDGLMSGFQLWVNLAGRDKMT 133
           M HRD+ G    + PG + WM AGRG+VHSE +P+   ++   + G Q+WV L    +  
Sbjct: 73  MMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQMWVALPADQEDG 132

Query: 134 TPGYSDIPSAQIPEVTPQDGVQVRVLAGEAFGVKGAVERPTTAP-LYLDLHVQADKRLAL 192
            P +    + ++P+ T   G ++ VLAG AFGV   V+  T +P LY+         L +
Sbjct: 133 APLFHHYAADEMPD-TVVGGARLHVLAGSAFGVSSPVQ--TASPTLYVAGSTTDGATLEI 189

Query: 193 PIPATHNAFLYVYEGEL 209
                  A +YV  GE+
Sbjct: 190 AAEVQERA-VYVVRGEV 205


>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 13/156 (8%)

Query: 58  GFPDHPHRGFETVTYMLQGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQEDGLM 117
           GF  H HR  E ++Y+L+G + H+D+ GN  ++ PG +Q M+AG G+ HSE    +DG  
Sbjct: 53  GFGTHGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTT 112

Query: 118 SGFQLWV--NLAGRDKMTTPGYSDIPSAQIPEVTPQDGVQVRVLAGEAFGVKGAVERPTT 175
              Q+W+  + AG      PGY +   +       +DG ++R++A  A G  G+V     
Sbjct: 113 HFLQIWIMPDRAG----AEPGYQEAHFS----AADKDG-KLRLVA-SADGRDGSVSMNQD 162

Query: 176 APLYLDLHVQADKRLALPIPATHNAFLYVYEGELLI 211
           A LY  L   A +     +P     +++V  G++ +
Sbjct: 163 AQLYAGLFDGA-QTAEYTLPQGRLGYVHVARGKISV 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,121,491
Number of extensions: 52089
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,212,660
Effective search space: 306802980
Effective search space used: 306802980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)