BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0210.0004.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311844|ref|YP_003775936.1| methylase of polypeptide chain ...   504   e-144

>gi|300311844|ref|YP_003775936.1| methylase of polypeptide chain
           release factors protein [Herbaspirillum seropedicae
           SmR1]
          Length = 395

 Score =  504 bits (1297), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/384 (65%), Positives = 293/384 (76%), Gaps = 7/384 (1%)

Query: 10  ISWTEAEENRSARWRSEAGNPAPKRVIVADDRIPADVAYKLVCEGTGLLWRGDFQNARQL 69
           ++W      +  RW SEAGNP PKRV  ADD+I AD AYKL CEG GLLWRGDFQNARQL
Sbjct: 11  LTWQTGSTQQQLRWHSEAGNPPPKRVQEADDQIAADTAYKLACEGCGLLWRGDFQNARQL 70

Query: 70  LQALARRIDKKSERKSVKAGDK-----KEPIPGITQAFHQHRQAQAQRARILGMLLVPLE 124
           LQAL RRIDK  ER   KA DK             QAFHQHRQ QAQRARILGMLL+P+E
Sbjct: 71  LQALGRRIDKARERALAKAKDKPAAGVAAGAGAAAQAFHQHRQMQAQRARILGMLLIPVE 130

Query: 125 ADYSIPLRRAPDVSQACEEVYGP--GQEASVATMREVLGLIGAHEWRKKGVPVPALGGSI 182
             + +PLRRAPDV  AC E YGP     A   ++RE+ GLIGAHEWRKKGV + ALG  I
Sbjct: 131 PGFVVPLRRAPDVQAACREAYGPELADTAFAVSLRELQGLIGAHEWRKKGVEIGALGARI 190

Query: 183 HPYYGVFSPVRGEYLDLVERATLPSVQLAFDIGTGTGVLAALLAKRGVKRIVATDQSTRA 242
           HP+YGVFSPVRGEY+DLV +A LPS +LAFDIG G+GVL+A+LA+RGV++IVATD   RA
Sbjct: 191 HPWYGVFSPVRGEYVDLVAQAALPSTELAFDIGVGSGVLSAVLAQRGVRKIVATDMDPRA 250

Query: 243 LECAAENLQRLGVDKQVELVAADLFPPGQAPLIVCNPPWVPAKPSSPIEHAIYDPDSRML 302
           L CA +NLQ+LG+ +QV+L  ADLFP G+APL+VCNPPW+PA+PSSPIEHA+YDPDSRML
Sbjct: 251 LACARQNLQQLGLHQQVQLQEADLFPEGRAPLVVCNPPWLPARPSSPIEHAVYDPDSRML 310

Query: 303 RGFLDGLAAHLAPNGEGWLILSDFAEHLGLRSRDELQAMFDKAGLRVALKQDIKPRHPRS 362
            GFL+GLA HL P GEGWLI+SDFAEHLGLR+   L     KAGL VA + DIKPRH ++
Sbjct: 311 LGFLNGLAQHLTPQGEGWLIMSDFAEHLGLRAPGMLAEAIAKAGLVVAGRHDIKPRHGKA 370

Query: 363 SDAEDPLHAARVKEVTSLWVLKAK 386
            D +DPLHAAR KE T+LW L+A+
Sbjct: 371 VDRDDPLHAARSKETTTLWRLRAQ 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,330,319
Number of extensions: 59823
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)