BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0209.0003.p (152 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t... 229 7e-62 gi|300314071|ref|YP_003778163.1| amino acid ABC transporter peri... 155 1e-39 gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC t... 147 2e-37 gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC t... 114 3e-27 >gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 229 bits (584), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 107/119 (89%), Positives = 112/119 (94%) Query: 1 MMTDSWYWDKDEASRQFANRFFLKMKKMPSTHQAAAYSATTTYLKAVAAIKTDDSTKVMA 60 MMTDSWYWDKDE SR+FA RFF KMKKMPSTHQAAAYSATTTYLKAV AI TDDSTKVMA Sbjct: 276 MMTDSWYWDKDEPSRKFAERFFQKMKKMPSTHQAAAYSATTTYLKAVQAIGTDDSTKVMA 335 Query: 61 ELKKMKIDDFYNKGYIRADGRNIHDMYLYQVKSPAESKKPWDYLKLVETIPGEQAFTTV 119 +LKK +IDDFYNKG IRADGRNIHDMYLYQVKSPAESKKPWDYLKL+ETIPGEQAFT+V Sbjct: 336 QLKKTRIDDFYNKGSIRADGRNIHDMYLYQVKSPAESKKPWDYLKLLETIPGEQAFTSV 394 >gi|300314071|ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 155 bits (393), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/118 (65%), Positives = 90/118 (76%), Gaps = 1/118 (0%) Query: 2 MTDSWYWDKDEASRQFANRFFLKMKKMPSTHQAAAYSATTTYLKAVAAIKTDDSTKVMAE 61 +TDSWYWD +E +R FA R+F KKMPS+ QAA YSA YLK V I TDDS KVMA Sbjct: 275 LTDSWYWDANEETRAFAKRYFAVRKKMPSSLQAADYSAALQYLKVVKEIGTDDSDKVMAA 334 Query: 62 LKKMKIDDFYNK-GYIRADGRNIHDMYLYQVKSPAESKKPWDYLKLVETIPGEQAFTT 118 L+K K +D Y K GY+RADGR +HDMYLYQVK+ +ESK PWDY KLV+TIP EQA+TT Sbjct: 335 LRKAKFNDMYQKNGYLRADGRVMHDMYLYQVKAQSESKYPWDYYKLVQTIPAEQAWTT 392 >gi|300309490|ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 147 bits (372), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 68/118 (57%), Positives = 90/118 (76%), Gaps = 1/118 (0%) Query: 2 MTDSWYWDKDEASRQFANRFFLKMKKMPSTHQAAAYSATTTYLKAVAAIKTDDSTKVMAE 61 +TD WYWD ++ +R +ANR+F+KMKKMPS QA SA YLKAV A+ + D+ KVM Sbjct: 277 LTDGWYWDLNDQTRAWANRYFMKMKKMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDY 336 Query: 62 LKKMKIDDFY-NKGYIRADGRNIHDMYLYQVKSPAESKKPWDYLKLVETIPGEQAFTT 118 L+K +I+DF+ + G +R DGR +HDMYL +VK P+ESK+PWDY KLV+TIPGEQA+ T Sbjct: 337 LRKNRINDFFTSNGVVRPDGRMVHDMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMT 394 >gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 410 Score = 114 bits (286), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 60/116 (51%), Positives = 76/116 (65%), Gaps = 2/116 (1%) Query: 3 TDSWYWDKDEASRQFANRFFLKMKKM-PSTHQAAAYSATTTYLKAVAAIKTDDSTKVMAE 61 TD +YWD DE +R F+ RF + K + P+ QA YS+ +LKA AA KT D V + Sbjct: 283 TDGFYWDYDEQTRAFSKRFESQFKNIKPTMVQAGVYSSVYQFLKARAAAKTSDWKVVAQK 342 Query: 62 LKKMKIDD-FYNKGYIRADGRNIHDMYLYQVKSPAESKKPWDYLKLVETIPGEQAF 116 ++++ I D IR DGR IHDMYLYQVK+PAESK PWDYLKL+ IP +QAF Sbjct: 343 MREIPIADAVMRNASIRPDGRVIHDMYLYQVKTPAESKGPWDYLKLLSVIPAQQAF 398 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.129 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 371,691 Number of extensions: 11719 Number of successful extensions: 46 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 4 Length of query: 152 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 75 Effective length of database: 1,255,275 Effective search space: 94145625 Effective search space used: 94145625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)