BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0208.0002.p (554 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Her... 972 0.0 gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep ... 239 3e-64 gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Her... 138 1e-33 gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Her... 66 9e-12 >gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] Length = 759 Score = 972 bits (2514), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/542 (90%), Positives = 516/542 (95%), Gaps = 4/542 (0%) Query: 6 IXAHHRDAALPQTFQILDSQDQLSAIKRLLKQMNVDDEKYPPRNLMYFINGAKDQGLRAK 65 + AHH+DA LPQTFQILD+QDQLSAIKRLLKQMNVDDEKYPPRNLMYFIN AKDQGLRAK Sbjct: 96 LRAHHKDAGLPQTFQILDTQDQLSAIKRLLKQMNVDDEKYPPRNLMYFINSAKDQGLRAK 155 Query: 66 DVEAHDDYNRKFVELYDLYDQQCQREGVVDFAELLLRTYELLSRNQPLREHYQRRFRHVL 125 DV+A+DDYNRKFVELY+LYDQQCQREGVVDFAELLLRTYELLSRNQPLREHYQ RFRH+L Sbjct: 156 DVDAYDDYNRKFVELYELYDQQCQREGVVDFAELLLRTYELLSRNQPLREHYQSRFRHIL 215 Query: 126 VDEFQDTNDLQYKWLKIMSGQGQVDGGAVFAVGDDDQSIYAFRGANVGNMTAFEREFRVQ 185 VDEFQDTNDLQYKWLK+M+GQ AVFAVGDDDQSIYAFRGANVGNM AFE+EF VQ Sbjct: 216 VDEFQDTNDLQYKWLKLMAGQHN----AVFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQ 271 Query: 186 NLIKLEQNYRSHGHILDAANILIANNSKRLGKNLRTDAGHGEQVRVFEASSDLQEAQWII 245 NLIKLEQNYRSHGHILD AN LIANNSKRLGKNLRTDAGHGEQVRV+EA+SDLQEAQWII Sbjct: 272 NLIKLEQNYRSHGHILDTANELIANNSKRLGKNLRTDAGHGEQVRVYEATSDLQEAQWII 331 Query: 246 EQVKNLIAEGWARSEIALLYRSNAQSRVLEHALFSSAIPYRVYGGQRFFERAEVKHAIAY 305 EQVK+LIAEGWARSEIA+LYRSNAQSRVLEHALFSSAIPYRVYGGQRFFERAE+KHAIAY Sbjct: 332 EQVKDLIAEGWARSEIAILYRSNAQSRVLEHALFSSAIPYRVYGGQRFFERAEIKHAIAY 391 Query: 306 LQLMDNLHNDSAFLRVVNFPTRGIGAKALEQLQDAARQYNCSLYAAVPYVAGKAGSTLNG 365 LQLMDNLHNDSAFLRVVNFPTRGIGAKA+E LQDAARQY CSLYAAVPYVAGKAGS+LN Sbjct: 392 LQLMDNLHNDSAFLRVVNFPTRGIGAKAMESLQDAARQYGCSLYAAVPYVAGKAGSSLNA 451 Query: 366 FVKLIEAARFETQNLPLQEMVQVVLDSSGLLTHYRNEKEGADRIENLEQLVSAATLFVSE 425 FVKLIE ARFETQ+LPL EMV+VVLD SGL+THYRNEKEGADRIENLEQLVSAATLFVSE Sbjct: 452 FVKLIEGARFETQHLPLPEMVKVVLDLSGLMTHYRNEKEGADRIENLEQLVSAATLFVSE 511 Query: 426 EGYGLDAPAFLGPQAQAVAGTSITTADGIEIIDADAALTTIMSPLSAFLSHASLEAGDNQ 485 EGYGLDAPAFLGPQAQA AG +ITTADG+E++DADA L TIMSPLSAFLSHASLEAGDNQ Sbjct: 512 EGYGLDAPAFLGPQAQATAGAAITTADGVEVLDADAPLVTIMSPLSAFLSHASLEAGDNQ 571 Query: 486 AQAGQDALQLMTVHSAKGLEFDAVFITGLEEGLFPHENSAKEEGGVEEERRLMYVAITRX 545 AQAGQDALQLMTVHSAKGLEFDAVFITG+EEGLFPHENSAKEEGGVEEERRLMYVAITR Sbjct: 572 AQAGQDALQLMTVHSAKGLEFDAVFITGMEEGLFPHENSAKEEGGVEEERRLMYVAITRA 631 Query: 546 SR 547 + Sbjct: 632 RK 633 >gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep [Herbaspirillum seropedicae SmR1] Length = 690 Score = 239 bits (611), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 189/553 (34%), Positives = 285/553 (51%), Gaps = 51/553 (9%) Query: 14 ALPQTFQILDSQDQLSAIKRLLKQMNVDDEKYPPRNLMYFI----NGAKDQGLRAKDVEA 69 L F I+DS D S L++++ V +K R + I NG D L K+ Sbjct: 106 GLKDRFSIMDSDDCFS----LVQELAVTTDKAIIRGVQNSISLWKNGLVDPDLAEKNART 161 Query: 70 HDDYNRKFVELYDLYDQQCQREGVVDFAELLLRTYELLSRNQPLREHYQRRFRHVLVDEF 129 D+ + +Y Y + VDF +L+ EL N+ +R+ +QR+ R++L+DE+ Sbjct: 162 EDEA--QAARIYRSYVATLKAYQAVDFDDLIRLPVELFRSNEEVRDRWQRKLRYLLIDEY 219 Query: 130 QDTNDLQYKWLKIM-SGQGQVDGGAVFAVGDDDQSIYAFRGANVGNMTAFEREFRVQNLI 188 QDTN QY+ +K++ +G G+ AVGDDDQ+IYA+RGA + N+ +F +LI Sbjct: 220 QDTNTCQYELVKLLVTGIGK--KPMFTAVGDDDQAIYAWRGATIENLKLLGVDFPNLHLI 277 Query: 189 KLEQNYRSHGHILDAANILIANNSKRLGKNLRTDAGHGEQVRVFEASSDLQEAQWIIEQV 248 KLEQNYRS IL AAN +I+NN K K L ++ G G+ + V + EA I + Sbjct: 278 KLEQNYRSSTRILQAANAVISNNPKLFDKTLWSEHGLGDPITVMAMDDEEAEADQIAITL 337 Query: 249 KNLIAEGWAR-SEIALLYRSNAQSRVLEHALFSSAIPYRVYGGQRFFERAEVKHAIAYLQ 307 E A+ ++ A+LYR N Q+R+LE +L IPY + GGQ +F+RAE+K IAYL+ Sbjct: 338 SAHRFERRAKFADYAILYRGNHQARILEKSLRRERIPYVMSGGQSYFDRAEIKDIIAYLR 397 Query: 308 LMDNLHNDSAFLRVVNFPTRGIGAKALEQLQDAARQYNCSLYAAVPYVAGKAGSTLNGFV 367 L+ N +D AF+R V P RG+G LE L A Q+ CSL+ AV Y G Sbjct: 398 LIANQDDDPAFIRAVTTPRRGVGQATLEVLGTLAGQWQCSLFEAV-YKGG---------- 446 Query: 368 KLIEAARFETQNLPLQEMVQVV--LDSSGLLTHYRNEKEGADRIENLEQLVSAATLFVSE 425 +E + Q LPL++ + L+S E A ++ L+ ++ A ++ Sbjct: 447 --LEDKLTDRQLLPLRKFCDFINALESRATRPGPSGSGENAGKV--LDDMMEA----INY 498 Query: 426 EGYGLDAPAFLGPQAQAVAGTSITTADGIEI-----IDADAALTTIMSPLSAFLSHASLE 480 E Y D +F AQA + + ++ D + ++ + LE Sbjct: 499 EFYLYD--SFEERAAQARWQNVVDFINWLKERACGGRDGEGEEKNLLEITQMVALMSMLE 556 Query: 481 AGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGLEEGLFPHENSA-----KEEGGVEEER 535 D + QDA+++ T+H++KGLEF VF+ G+EEG+ PH+ + VEEER Sbjct: 557 GRDEE----QDAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPDTPPEEAAARVEEER 612 Query: 536 RLMYVAITRXSRA 548 RLMYV ITR R+ Sbjct: 613 RLMYVGITRAQRS 625 >gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] Length = 707 Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/260 (35%), Positives = 141/260 (54%), Gaps = 7/260 (2%) Query: 72 DYNRKFVELYDLYDQQCQREGVVDFAELLLRTYELLSRNQPLREHYQRRFRHVLVDEFQD 131 ++ R EL+ Y + + V+D+ +LLL ++L Q + + +RF HVLVDE+QD Sbjct: 203 EWERPLGELFGRYVDAKEEQHVLDYDDLLLFWADMLGDAQ-IAQSVGQRFDHVLVDEYQD 261 Query: 132 TNDLQYKWLKIMSGQGQVDGGAVFAVGDDDQSIYAFRGANVGNMTAFEREF-RVQNLIKL 190 TN LQ + L+ M + DG V AVGDD Q+IY+FRGA V N+ F F + L+ L Sbjct: 262 TNRLQAEILQRM----KPDGAGVTAVGDDAQAIYSFRGATVRNILDFPGLFTQPVRLLTL 317 Query: 191 EQNYRSHGHILDAANILIANNSKRLGKNLRTDAGHGEQVRVFEASSDLQEAQWIIEQVKN 250 EQNYRS IL A+N +IA+ +R K+L +D ++ ++ + ++A+W+ ++ Sbjct: 318 EQNYRSTQPILHASNAVIADAPERHVKHLWSDKPSSQKPQLVVIPDEAEQARWVANRILA 377 Query: 251 LIAEGWARSEIALLYRSNAQSRVLEHALFSSAIPYRVYGGQRFFERAEVKHAIAYLQLMD 310 EG A+L+R+ S LE L IP+ +GG +F E +K +A L+L Sbjct: 378 HREEGLTLKSQAVLFRTATHSAALELELARRNIPFVKFGGLKFLESGHIKDLLALLRLAH 437 Query: 311 NLHNDSAFLRVVNFPTRGIG 330 N A LR + G+G Sbjct: 438 NPSGRMAGLRALQL-IPGVG 456 >gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] Length = 1158 Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 84 YDQQCQREGVVDFAELLLRTYELLSRNQP----LREHYQRRFRHVLVDEFQDTNDLQY-- 137 Y + + V+DFA+L + Y LL RN+ L+ R++H+L+DEFQDTN LQ+ Sbjct: 387 YQEVKAEQRVLDFADLEWQAYRLL-RNEASAAYLQTRLDARYKHILLDEFQDTNPLQWCI 445 Query: 138 --KWLKIMSGQGQVDGGAVFAVGDDDQSIYAFRGANVGNMTAFEREFRVQN--LIKLEQN 193 WL G +VF VGD QSIY FR A A R Q +++ Q Sbjct: 446 VRCWLDAYGGDAA--QPSVFVVGDPKQSIYRFRRAEPRVFVAAREMLRAQGAAILRANQT 503 Query: 194 YRSHGHILDAAN 205 R+ ++D N Sbjct: 504 RRNATAVVDVLN 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,439,002 Number of extensions: 53095 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 5 Length of query: 554 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 464 Effective length of database: 1,193,720 Effective search space: 553886080 Effective search space used: 553886080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)