BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0035.p (336 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [H... 379 e-106 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 191 5e-50 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 190 2e-49 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 181 1e-46 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 173 2e-44 >gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/254 (73%), Positives = 216/254 (85%), Gaps = 1/254 (0%) Query: 6 SPALLSLSGIGKTYIEPVLAEVSLEIRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAM 65 SP LL+LSGIGK Y PVL + L++RPGQ+LALTGENGAGKSTLSKI+CGLV ++ G M Sbjct: 11 SP-LLTLSGIGKRYAAPVLDGIDLDLRPGQVLALTGENGAGKSTLSKIICGLVDASAGGM 69 Query: 66 RLDGQPYQPRSRTEAEQLGIRMVMQELNLIPTLSIAENLFLNQLPQRFGWIDKPKLAALA 125 LDGQPY P SRT+AE LGIRMVMQELNLIPTLSIAENLFL +LP+RFGWID+ KLA A Sbjct: 70 MLDGQPYAPASRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKKLAEAA 129 Query: 126 QAQMAAVGLTDIDPWTPVGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTSREVELLF 185 +AQM VGL ++DPWTPVG+LG+GHQQMVEIARNLIGSCR L+LDEPTAMLT+REVELLF Sbjct: 130 RAQMEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREVELLF 189 Query: 186 AQIARLQSEGVAIIYISHRLEELKQVADRIAVLRDGKLVCDDMIDGYSSDALVQLMVGRA 245 ++I RL++EGVAIIYISHRLEELK++ADRI VLRDGKLVC+D I YS++ LVQLM G Sbjct: 190 SRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTEQLVQLMAGEL 249 Query: 246 AEAELDLXGIDIGA 259 + +LD IGA Sbjct: 250 TKVDLDAEHRRIGA 263 Score = 117 bits (294), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 56/73 (76%), Positives = 63/73 (86%) Query: 254 GIDIGAKFDIYKLMADLSRQGKGLLIVSSDLRELMLICDRIAVMSAGKLVDTFERGQWSQ 313 GIDIGAK DIY+L A+L+ QGKGLL+VSSDLRELM ICDRIAVMSAG++ DTF R WSQ Sbjct: 435 GIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSAGRIADTFSRDDWSQ 494 Query: 314 EAILAAAFSGYMN 326 E ILAAAFSGY+ Sbjct: 495 ERILAAAFSGYVG 507 Score = 82.0 bits (201), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 17/235 (7%) Query: 9 LLSLSGIGKTYIEPVLAEVSLEIRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMRL- 67 +L + G+G+ PV+ SL + G++L + G G+G++ L +++ G ++ G + + Sbjct: 265 VLRIRGLGRA---PVVHPASLALHAGEVLGIAGLIGSGRTELLRLIFGADRAEQGEIFIG 321 Query: 68 DGQ-PYQPRSRTEAEQLGIRMVMQELN----LIPTLSIAENLFLNQLPQ--RFGWIDKPK 120 D Q P + RS +A + GI MV ++ L+P +I+ N L L R G +D Sbjct: 322 DSQEPARIRSPKDAVKAGIAMVTEDRKGQGLLLPQ-AISVNTSLANLGSVSRGGMLDHAA 380 Query: 121 LAALAQAQMAAVGLTDIDPWTPVGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTSRE 180 +++AQ + + + GEL G+QQ V IAR L C +++ DEPT + Sbjct: 381 ESSVAQDYVKKLRIRSGSVAQAAGELSGGNQQKVVIARWLYRDCPIMLFDEPTRGIDIGA 440 Query: 181 VELLFAQIARLQSEGVAIIYISHRLEELKQVADRIAVLRDGKLVCDDMIDGYSSD 235 ++ A L ++G ++ +S L EL Q+ DRIAV+ G++ D +S D Sbjct: 441 KSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSAGRIA-----DTFSRD 490 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 191 bits (486), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 105/228 (46%), Positives = 153/228 (67%), Gaps = 3/228 (1%) Query: 24 LAEVSLEIRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMRLDGQPYQPRSRTEAEQL 83 L E+ G++ AL GENGAGKSTL KI+ G+ Q +G + LDG+P + +A+ L Sbjct: 38 LDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKPVEITEPRQAQAL 97 Query: 84 GIRMVMQELNLIPTLSIAENLFLNQLPQR-FG-WIDKPKLAALAQAQMAAVGLTDIDPWT 141 GI ++ QELNL+ LS A+N+F+ + P++ G +ID+ +L A A A + L D+DP T Sbjct: 98 GIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQAAAIFARMRL-DMDPST 156 Query: 142 PVGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTSREVELLFAQIARLQSEGVAIIYI 201 PVGEL V QQMVEIA+ L R+L++DEPTA L + E+ LF I LQ++GV I+YI Sbjct: 157 PVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFRIIRDLQAQGVGIVYI 216 Query: 202 SHRLEELKQVADRIAVLRDGKLVCDDMIDGYSSDALVQLMVGRAAEAE 249 SH+++EL+Q+ADR++V+RDGK + + S D ++ +MVGRA + E Sbjct: 217 SHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMVGRALDGE 264 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 5/205 (2%) Query: 24 LAEVSLEIRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMRLDGQPYQPRSRTEAEQL 83 + +VS +R G+IL G GAG++ +++ + G G + + G +S +A Sbjct: 289 IRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVAH 348 Query: 84 GIRMVMQE---LNLIPTLSIAENLFLNQLPQ--RFGWIDKPKLAALAQAQMAAVGLTDID 138 GI + ++ L + + N+ L+ + + R G++D+ + AQ + + + Sbjct: 349 GIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRVGFMDQRAIREAAQMYVRQLAIKTPS 408 Query: 139 PWTPVGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTSREVELLFAQIARLQSEGVAI 198 L G+QQ + IA+ L+ C +L DEPT + ++ + L +G AI Sbjct: 409 VEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAI 468 Query: 199 IYISHRLEELKQVADRIAVLRDGKL 223 + IS L E+ +++ R+ V+ +G++ Sbjct: 469 VMISSELPEVLRMSHRVLVMCEGRI 493 Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 44/67 (65%) Query: 254 GIDIGAKFDIYKLMADLSRQGKGLLIVSSDLRELMLICDRIAVMSAGKLVDTFERGQWSQ 313 GID+GAK +IYKL+ L+ QGK ++++SS+L E++ + R+ VM G++ R +Q Sbjct: 445 GIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGELARADATQ 504 Query: 314 EAILAAA 320 E I+ A Sbjct: 505 EKIMQLA 511 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 190 bits (482), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 113/242 (46%), Positives = 151/242 (62%), Gaps = 3/242 (1%) Query: 8 ALLSLSGIGKTYIE-PVLAEVSLEIRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMR 66 A+L L+GI K + VL V LE+R G++ AL GENGAGKSTL KI+CG+V+ G +R Sbjct: 4 AMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIR 63 Query: 67 LDGQPYQPRSRTEAEQLGIRMVMQELNLIPTLSIAENLFL-NQLPQRFGWIDKPKLAALA 125 +DGQP + S A G+ +V QE +LIP L +N+FL +L R+GW+ + + A Sbjct: 64 IDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMRRRA 123 Query: 126 QAQMAAVGLTDIDPWTPVGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTSREVELLF 185 Q + +G+ I PV +L V QQ VEIA+ L R+LVLDEPTA LT EVE LF Sbjct: 124 QEIIGQLGVA-IPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLF 182 Query: 186 AQIARLQSEGVAIIYISHRLEELKQVADRIAVLRDGKLVCDDMIDGYSSDALVQLMVGRA 245 A + L+++GVAII+ISH LEE+ ++ DRI VLRDG V LV++MVGR Sbjct: 183 AVMRSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEMMVGRR 242 Query: 246 AE 247 E Sbjct: 243 IE 244 Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 6/202 (2%) Query: 29 LEIRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMRLDGQPYQPRSRTEAEQLGIRMV 88 ++R G+IL G G+G++ + G + + + + G P + +A Q GI ++ Sbjct: 279 FQLRRGEILGFAGLVGSGRTETVLAMLGAHAALSCKLSMHGVPLRFADPAQALQAGIGLL 338 Query: 89 ---MQELNLIPTLSIAENLFLNQLPQ-RFG--WIDKPKLAALAQAQMAAVGLTDIDPWTP 142 +E LI + SI N+ LN + R G ++D+ + +A M V + Sbjct: 339 PESRKEQGLITSFSILHNVSLNNYGKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVR 398 Query: 143 VGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTSREVELLFAQIARLQSEGVAIIYIS 202 V L G+QQ V IAR + + ++L+ DEPT + ++ + ++G +I+ IS Sbjct: 399 VDTLSGGNQQKVVIARWINHAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMIS 458 Query: 203 HRLEELKQVADRIAVLRDGKLV 224 L E+ +ADR+ V R G +V Sbjct: 459 SELPEVVGMADRVCVFRGGGIV 480 Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 47/76 (61%) Query: 254 GIDIGAKFDIYKLMADLSRQGKGLLIVSSDLRELMLICDRIAVMSAGKLVDTFERGQWSQ 313 GID+GAK +IY+LM + + QG +L++SS+L E++ + DR+ V G +V T E + Sbjct: 431 GIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMADRVCVFRGGGIVATLEGEAVNA 490 Query: 314 EAILAAAFSGYMNSPS 329 E I+ A +G + + Sbjct: 491 EEIMTHATTGRIRHAA 506 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 181 bits (458), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 103/243 (42%), Positives = 151/243 (62%), Gaps = 11/243 (4%) Query: 9 LLSLSGIGKTYIEPV-LAEVSLEIRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMRL 67 LL + GI K++ + L+++ L IRPG+I AL GENGAGKSTL K++ G+ G + L Sbjct: 6 LLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILL 65 Query: 68 DGQPYQPRSRTEAEQLGIRMVMQELNLIPTLSIAENLFL-NQLPQRFGWIDKPKLAALAQ 126 DG+P R + GI ++ QEL + P +S+A N+F+ ++L R G ID + + Sbjct: 66 DGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHAAMRSRTD 125 Query: 127 AQM----AAVGLTDIDPWTPVGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTSREVE 182 A + A G +D+ G L + QQ VEIAR L+ R++++DEPTA L+ RE E Sbjct: 126 AVLRQLGAGFGASDL-----AGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETE 180 Query: 183 LLFAQIARLQSEGVAIIYISHRLEELKQVADRIAVLRDGKLVCDDMIDGYSSDALVQLMV 242 LF + RL+ EG+AIIYISHR+ E+ +ADR+ VLRDG V + + D S+ +VQ+MV Sbjct: 181 QLFNVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQMMV 240 Query: 243 GRA 245 GR+ Sbjct: 241 GRS 243 Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 15/228 (6%) Query: 7 PALLSLSGIGKTYIEPVLAEVSLEIRPGQILALTGENGAGKSTLSKIVCGLVQSTTGAMR 66 P ++ + + I P S ++R G++L G GAG++ L++++ G + G + Sbjct: 262 PTVMQVRALAGGKIRPA----SFDVRAGEVLGFAGLVGAGRTELARLLFGADPRSGGDIL 317 Query: 67 LDGQPY---QPRSRTEAEQLGIRMVMQELN---LIPTLSIAENLFLNQLPQ--RFGWIDK 118 L+G+P QPR+ A + GI V ++ L +++A N +N + R G + Sbjct: 318 LEGRPVHIDQPRA---AMRAGIAYVPEDRKGQGLFLQMAVAANATMNVASRHTRLGLVRS 374 Query: 119 PKLAALAQAQMAAVGLTDIDPWTPVGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTS 178 L +A+A + + + P TPVG+L G+QQ V +AR L + ++L+LDEPT + Sbjct: 375 RSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDI 434 Query: 179 REVELLFAQIARLQSEGVAIIYISHRLEELKQVADRIAVLRDGKLVCD 226 ++ + RL S+GVA++ IS L E+ + DR+ V+R+G + + Sbjct: 435 YAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVMREGMITGE 482 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/247 (40%), Positives = 151/247 (61%), Gaps = 4/247 (1%) Query: 6 SPALLSLSGIGKTYIE-PVLAEVSLEIRPGQILALTGENGAGKSTLSKIVCGLVQSTT-- 62 S LL + GI K++ L + ++IRPG+ + L GENGAGKSTL KI+ G+ T Sbjct: 2 SEYLLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWE 61 Query: 63 GAMRLDGQPYQPRSRTEAEQLGIRMVMQELNLIPTLSIAENLFL-NQLPQRFGWIDKPKL 121 G + DG+P Q S + E GI ++ QEL L+P LS+AEN+F+ +++ G ++ P + Sbjct: 62 GEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAM 121 Query: 122 AALAQAQMAAVGLTDIDPWTPVGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTSREV 181 A+ M + + DI+ PV + G GHQQ+VEIA+ L RLL+LDEP++ LT+ E+ Sbjct: 122 YRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEI 181 Query: 182 ELLFAQIARLQSEGVAIIYISHRLEELKQVADRIAVLRDGKLVCDDMIDGYSSDALVQLM 241 +L I L++ GVA +YISH+L+E+ +V D I+V+RDGK + + D ++ M Sbjct: 182 GVLLKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIITQM 241 Query: 242 VGRAAEA 248 VGR A Sbjct: 242 VGREITA 248 Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 113/219 (51%), Gaps = 6/219 (2%) Query: 26 EVSLEIRPGQILALTGENGAGKSTLSKIVCGLVQST-TGAMRLDGQPYQPRSRTEAEQLG 84 +VS +R G+IL + G GAG++ L + G + G + L+G+P S ++ + G Sbjct: 282 DVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRG 341 Query: 85 IRMVMQELN---LIPTLSIAENLFLNQLPQ--RFGWIDKPKLAALAQAQMAAVGLTDIDP 139 + MV ++ ++P L + +N+ L L + R ID Q ++ + + P Sbjct: 342 LCMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATP 401 Query: 140 WTPVGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTSREVELLFAQIARLQSEGVAII 199 + P+ L G+QQ +A+ L+ ++L+LDEPT + ++ I+ L G+AII Sbjct: 402 FLPITSLSGGNQQKAVLAKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAII 461 Query: 200 YISHRLEELKQVADRIAVLRDGKLVCDDMIDGYSSDALV 238 +S L E+ V+DR+ V+ +G+L D + D S + ++ Sbjct: 462 MVSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQETVL 500 Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 2/83 (2%) Query: 254 GIDIGAKFDIYKLMADLSRQGKGLLIVSSDLRELMLICDRIAVMSAGKLVDTFERGQWSQ 313 G+D+GAK +IY+L+++L++ G +++VSS+L E++ + DR+ V+ G+L F SQ Sbjct: 437 GVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQ 496 Query: 314 EAILAAAFSGYMNSPSATAEQTA 336 E +LAAA + P AT A Sbjct: 497 ETVLAAAIN--QPVPQATPRAAA 517 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 920,354 Number of extensions: 36205 Number of successful extensions: 601 Number of sequences better than 1.0e-08: 121 Number of HSP's gapped: 412 Number of HSP's successfully gapped: 144 Length of query: 336 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 250 Effective length of database: 1,212,660 Effective search space: 303165000 Effective search space used: 303165000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)