BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0033.p
         (519 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312715|ref|YP_003776807.1| lytic murein transglycosylase [...   787   0.0  
gi|300311684|ref|YP_003775776.1| soluble lytic murein transglyco...    60   4e-10

>gi|300312715|ref|YP_003776807.1| lytic murein transglycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 509

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/499 (79%), Positives = 428/499 (85%), Gaps = 14/499 (2%)

Query: 1   MQLTFRKLAIATLFSLGTPLLAHANDISIYPAAFNAINPNDPSSALPGMEDIDIWARIRK 60
           MQ T ++LAIA LF  G PLL++ANDISIYPA FNAINP    +ALPGM DIDIW RIRK
Sbjct: 1   MQRTLKQLAIAALFCAGAPLLSYANDISIYPAPFNAINPELAGNALPGMNDIDIWTRIRK 60

Query: 61  GFGIPNLENPLVDNQTQWYSSRPDYIQRPRGRGPPPPPHVVQELEKRGMPTELALLPFIE 120
           GFGIP+L+N LV++QTQWYSSRPDYIQR   R      HVVQELEKRGMPTELALLPFIE
Sbjct: 61  GFGIPDLDNSLVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIE 120

Query: 121 SAFNPQALSTAKAAGMWQFIPSTGRDYNLKQNLFTDERRDVLASTDAALTYLQKLYGMFG 180
           SAFNP+ALSTAKAAGMWQFIPSTGRDYNLKQN+FTDERRDVLASTDAALTYLQKLYGMFG
Sbjct: 121 SAFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFG 180

Query: 181 DWQLALAAYNWGEGSVQRAVNRNLAAGLPIDFNTLSAQMPNETRNYVPKLQAVKNIIAMP 240
           DWQLALAAYNWGEGSVQRAVNRNLAAG+PIDFNTLSAQMPNETRNYVPKLQAVKNIIA P
Sbjct: 181 DWQLALAAYNWGEGSVQRAVNRNLAAGMPIDFNTLSAQMPNETRNYVPKLQAVKNIIANP 240

Query: 241 GDFGIDLPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGGDDTK 300
             F I LPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGG+DTK
Sbjct: 241 AAFDIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGGEDTK 300

Query: 301 ILLPESNAEKFKTNMSKFTQALSSWTAHTVSSARERIETIASRFGTTPDVIRSVNQIPPK 360
           ILLPESNAEKFK NMSK+TQA S+WTAHTVSSARERIETIAS+FGTTP+VIRSVNQIPP+
Sbjct: 301 ILLPESNAEKFKANMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPR 360

Query: 361 MVLKAGSMILVPKTE--TSMEADITPEMADSARLAVAPDVPDFKRIYVKAGKRDTLASIA 418
           MVLKAGS ILVPKTE   +++ D+TPE+AD+ARLA+APDVP+ +RIYVKAGKRDTLA IA
Sbjct: 361 MVLKAGSTILVPKTEETAALDTDLTPEIADNARLAIAPDVPETRRIYVKAGKRDTLAGIA 420

Query: 419 SRYRVSVVQIKQWNSLHRDTLANGQSLQLQVP----------YQTPAAAPIRVRQVIHAP 468
           SRYRV+V QIK+WN L RDTLA GQSLQLQVP               AAP R RQV  A 
Sbjct: 421 SRYRVTVAQIKEWNGLKRDTLAAGQSLQLQVPNVAGHATTRVASHHRAAPAR-RQVASAK 479

Query: 469 AKPIRKAPAVVAKNTRAAP 487
           A P+RKA    A+     P
Sbjct: 480 A-PVRKAAPAPARKVAGKP 497


>gi|300311684|ref|YP_003775776.1| soluble lytic murein
           transglycosylase [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 15/117 (12%)

Query: 93  GPPPPPHVVQEL-----EKRGMPTE-LALLPFIESAFNPQAL-----STAKAAGMWQFIP 141
           G PP     Q+L        GMP E LA   + ES +NP  +     S   A G+ QF+P
Sbjct: 60  GWPPGSGPYQQLIASSASANGMPAEILAWQLWKESRYNPAIINGTIKSRVGAMGIGQFMP 119

Query: 142 STGRDYNLKQNLFTDERRDVLASTDAALTYLQKLYGMFGDWQLALAAYNWGEGSVQR 198
           +T R+    +    D +R +         Y+ KLY   G W+LALAAYNWG G+VQR
Sbjct: 120 ATAREELGSEAAALDPQRAI----PGVAAYMAKLYRKTGSWKLALAAYNWGIGNVQR 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,516,451
Number of extensions: 59569
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 2
Length of query: 519
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 430
Effective length of database: 1,198,455
Effective search space: 515335650
Effective search space used: 515335650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)