BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0030.p
         (149 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312712|ref|YP_003776804.1| ribonuclease HI protein [Herbas...   247   3e-67

>gi|300312712|ref|YP_003776804.1| ribonuclease HI protein
           [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  247 bits (631), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 115/143 (80%), Positives = 131/143 (91%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +D+VEIY+DGACKGNPG GGWGALL+AGG+EKE+ GGE NTTNNRMEL AVI+AL AL R
Sbjct: 1   MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            C+V V+TDSQYVQKGISEWIHGWKARGWKTA++EPVKN DLWQALDAAQ QH++EWRWV
Sbjct: 61  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 120

Query: 126 KGHAGHPGNERADQLANRGVETV 148
           +GH GH GNERADQLANRGVE++
Sbjct: 121 RGHNGHAGNERADQLANRGVESI 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 498,871
Number of extensions: 17781
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,255,275
Effective search space: 90379800
Effective search space used: 90379800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)