BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0027.p (485 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 637 0.0 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 248 5e-67 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 193 3e-50 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 176 3e-45 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 173 3e-44 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/442 (71%), Positives = 372/442 (84%), Gaps = 1/442 (0%) Query: 15 IPLTVYVGVSTSFTHDSAVASADLVQDRALLASARMIAGQVTWEDGAPVVNIPPAALEMF 74 IP+ VYVG+STS +D+AV+SA LVQDRALLASARMIAGQV W DGAPVV++PPAALE+F Sbjct: 15 IPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPVVSVPPAALELF 74 Query: 75 ASPDHDEVYYQVLMDDNTLLAGRPDFPVDIDFSLIAPAYATTYFNNQPLRVVSYVRALYD 134 ASP D VYYQVLMDD+TLLAGRPDFP DF+ + P Y+TT FN +PLRVVSY+RAL+D Sbjct: 75 ASPAQDAVYYQVLMDDDTLLAGRPDFPAAPDFAALYPVYSTTSFNGKPLRVVSYIRALFD 134 Query: 135 NGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIVMLLLAIALVVVGLTMELRPILRVKD 194 GTLRMVAVSVGQTM+G +++D+ W +L RQIV+LLLAI+LVV+GLTMELRP+L +KD Sbjct: 135 EGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRPLLALKD 194 Query: 195 ELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQKRFIADAAHQLRTPLTL 254 ELATR P+SLTPLRAG LQ ELRPIV AINQYI RLN QV VQKRF+ADAAHQLRTPL + Sbjct: 195 ELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAV 254 Query: 255 IDSQIQFARQLNDPQRLPQVLQALQDSSRNMTDLTNKLLQLSQAEASNSTAFPRQPIELV 314 IDSQIQFARQL+DP R+ QVL +LQ+ SR+MTDLTNKLL LSQAEAS+S+AFPR P++L+ Sbjct: 255 IDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASDSSAFPRAPVDLL 314 Query: 315 GLAATVLEELVSLAQRKHIDLGMETAVDEAWVMGSQALFSGMLMNLIDNALRYTPEHGKV 374 ++A VLEEL LA +K IDLG+ET ++ A V G++A GMLMNLIDNALRYTPE GKV Sbjct: 315 AVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLIDNALRYTPEGGKV 374 Query: 375 TVGVALEDNKEVIITVADNGPGIPAEVRERVFERFYRNAAPDQHGAGLGMAIVKEIVQAS 434 TVG+ + ++IITV+DNGPGIPAEVRERVFERFYRNAAPDQ G+GLG+AIV+EIVQAS Sbjct: 375 TVGLE-KKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQAS 433 Query: 435 HGTIILGTDRDGKGLTVTVKLP 456 G+I L G GL TV LP Sbjct: 434 QGSIRLDAPAQGSGLVATVSLP 455 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 248 bits (634), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 256/469 (54%), Gaps = 22/469 (4%) Query: 4 SLRLRLLLWLLIPLTVYVGVSTSFTHDSAVASADLVQDRALLASARMIAGQVTWEDGAPV 63 SLR +L+ WLLIPLT+ V V + +A+ ADL DR+LLAS R +A +V+ DG Sbjct: 10 SLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVT 69 Query: 64 VNIPPAALEMFASPDHDEVYYQVLMDDNTLLAGRPDFPV---DIDFSLIAPAYATTY--- 117 ++P AL+ F + + +YY+V + L++G D P D+ S + PA Y Sbjct: 70 ADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQAD 129 Query: 118 FNNQPLRVVSYVRALYDNGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIVMLLLAIAL 177 +++QP+R+ + ++ +YD+ + + VG+TM G + ++ L RQ ++ +A L Sbjct: 130 YHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALL 189 Query: 178 VVVGLTMELRPILRVKDELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQ 237 V + LRP++++K E+ +R P L+ + E+RP+V A+N Y+ RL ++ Q Sbjct: 190 VWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQ 249 Query: 238 KRFIADAAHQLRTPLTLIDSQIQFA-----RQLNDPQRLPQVLQALQDSSRNMTDLTNKL 292 +RFIADA+HQLRTPLT++ +Q + R+ D L +++ + ++ L N+L Sbjct: 250 RRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRL 309 Query: 293 LQLSQAEASNSTAFPRQPIELVGLAATVLEELVSLAQRKHIDLGMETAVDEAWVMGSQAL 352 L L++AE + P+ L A V EL A + I L E D + + + L Sbjct: 310 LTLARAEHGAAEG-GTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVS-IEANALL 367 Query: 353 FSGMLMNLIDNALRYTPEHGKVTVGVALEDNKE----VIITVADNGPGIPAEVRERVFER 408 +++NL+DNA+RYTP G VT+ V + + ++ V D+GPGIPA RE+VFE Sbjct: 368 LHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAAEREKVFEP 427 Query: 409 FYRNAAPDQH----GAGLGMAIVKEIVQASHGTIILGTDRDGKGLTVTV 453 FYR A QH G GLG++IV+EI ++ L G GL V + Sbjct: 428 FYR-AGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRI 475 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 193 bits (491), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 114/299 (38%), Positives = 178/299 (59%), Gaps = 5/299 (1%) Query: 139 RMVAVSVGQTMRGHAQLLDELWRPALHRQIVMLLLAIALVVVGLTMELRPILRVKDELAT 198 R+ V VG+T+ AQL +E+ + + Q ++L +A+ALV L+ L P+ ++ + Sbjct: 51 RLATVQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRA 110 Query: 199 REPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQKRFIADAAHQLRTPLTLIDSQ 258 R P+ L+P+ +G++ E+ P+V ++N + RL+ +A+QKRFIADAAHQ++TPL + Q Sbjct: 111 RRPDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQ 170 Query: 259 IQFARQLNDPQRLPQVLQALQDSSRNMTDLTNKLLQLSQAEASNSTAFPRQPIELVGLAA 318 + A + +D + + L+ L SS T L N+LL L++AE S + P+EL LA Sbjct: 171 SELALRQDDQVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELAR 230 Query: 319 TVLEELVSLAQRKHIDLGMETAVDEAWVMGSQALFSGMLMNLIDNALRYTPE--HGKVTV 376 +V+++ V ++ + IDLG E + G+ + +L NL+DNAL YTP +G+VTV Sbjct: 231 SVVQDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTV 290 Query: 377 GVALEDNKEV-IITVADNGPGIPAEVRERVFERFYR--NAAPDQHGAGLGMAIVKEIVQ 432 ++ + I+ V DNGPGIP R VFERFYR G GLG+AIV+EI Q Sbjct: 291 RARTDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLGLGLAIVREIAQ 349 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 176 bits (447), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 137/473 (28%), Positives = 226/473 (47%), Gaps = 19/473 (4%) Query: 1 MIVSLRLRLLLWLLIPLTVYVGVSTSFTHDSAVASADLVQDRALLASARMIAGQVTWEDG 60 M S+R LL WL+ PL + + T+ A A D+ L+ S + QV Sbjct: 4 MHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQE 63 Query: 61 APVVNIPPAALEMFASPDHDEVYYQVLMDDNTLLAGRPDFP-VDIDFSLIAPAYATTYFN 119 + A ++ S D ++ V + ++ G FP + P Sbjct: 64 RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMR 123 Query: 120 NQPLRVVSYVRALYDNGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIVMLLLAIALVV 179 +P+R+ + ++ NG ++ V+V +T+R + + L + +I +V+ Sbjct: 124 GEPVRIAA-MQVRVKNG---VIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVL 179 Query: 180 VGLTMELRPILRVKDELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQKR 239 V + LRP+ ++ L R+ L + VEL+P++VA+N+ + R+N Q+ Sbjct: 180 VAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQN 239 Query: 240 FIADAAHQLRTPLTLIDSQIQFARQLNDPQ-RLPQVLQALQDSSRNMTDLTNKLLQLSQA 298 F+AD AHQLRTPLT + Q++ + Q + L + S M + +LL L+++ Sbjct: 240 FMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARS 299 Query: 299 EASNSTAFPRQPIELVGLAATVLEELVSLAQRKHIDLGMETAVDEAWVMGSQALFSGMLM 358 E + + + L L ++ + A +K IDLG + + A + G + L S ++ Sbjct: 300 EPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFD--LRPARLRGDRFLLSDLID 357 Query: 359 NLIDNALRYTPEHGKVTVGVALEDNKEVIITVADNGPGIPAEVRERVFERFYRNAAPDQH 418 NLIDNA+RY+P HG VTV LE+ +++V D+GPGI E RE +F+RFYR A Sbjct: 358 NLIDNAVRYSPPHGTVTV-RCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYR-ANDKVA 415 Query: 419 GAGLGMAIVKEIVQASHGTIILGTDRDGKGLTVTVKLPICTRPXPSSSPPPAA 471 G+GLG+AIV+EI G I + G+G TV+ P+ PPAA Sbjct: 416 GSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVRFPLA---------PPAA 459 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 173 bits (438), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 131/466 (28%), Positives = 232/466 (49%), Gaps = 21/466 (4%) Query: 4 SLRLRLLLWLLIPLTVYVGVSTSFTHDSAVASADLVQDRALLASARMIAGQVTWEDGAPV 63 S+R LL W++ P+ +++ + + + + + S + DR L+AS I + E+G Sbjct: 10 SVRAYLLAWIISPIALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENGELK 69 Query: 64 VNIPPAALEMFASPDHDEVYYQVLMDDNTLLAGRPDFPV---DIDFSLIAPAYATTY--- 117 ++P AALE++ + + Y++ D G D P D I PA A Y Sbjct: 70 ASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHIYEDT 129 Query: 118 FNNQPLRVVSYVRALYDNGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIVMLLLAIAL 177 +N P+RV + + + N V V +TM + L +++ L RQ +L++ +++ Sbjct: 130 YNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQAALLVVIVSV 189 Query: 178 VVVGLTMELRPILRVKDELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQ 237 + + L+P+ ++ +L R + L+P+ EL+P + A+NQ + RL + Q Sbjct: 190 TLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLMARLRRLLDHQ 249 Query: 238 KRFIADAAHQLRTPLTLIDSQIQFARQLNDPQRLPQVLQALQDSSRNMTDLTNKLLQLSQ 297 +RF+A+A+HQLRTPL ++ +Q+Q + + P P + Q + + T L N+LL L++ Sbjct: 250 QRFVANASHQLRTPLAVLKTQLQSGLRGDAPA--PVIWQEMSGTVERATTLANQLLSLAK 307 Query: 298 AEASNSTAFPRQPIELVGLAATVLEELVSLAQRKHIDLGMETAVDEAWVMGSQALFSGML 357 E ++ +L LA +L L K +D +E ++ VMG + ++ Sbjct: 308 VEQIRGRG-AQEVCDLGMLARETAVDLSPLIAEKDLDFELEA--EKILVMGHPWMIGELI 364 Query: 358 MNLIDNALRYTPEHGKVTVGV-ALEDNKEVIITVADNGPGIPAEVRERVFERFYRNAAPD 416 NL+ NA+R+TP G++ + + A ED E++I D+G GI + E VF+ F N + Sbjct: 365 SNLLHNAIRHTPAQGRLGIRITAREDVAELLIW--DSGEGIDDQAMENVFKAFSSNVSS- 421 Query: 417 QHGAGLGMAIVKEIVQASHGTIIL----GTDRDGKGLTVTVKLPIC 458 GLG+ I EIV + TI L G D +GL +V + + Sbjct: 422 --AGGLGLTICGEIVDSMQATISLRNRVGEDGTIEGLNASVHVRVV 465 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,326,158 Number of extensions: 53079 Number of successful extensions: 310 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 251 Number of HSP's successfully gapped: 40 Length of query: 485 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 396 Effective length of database: 1,198,455 Effective search space: 474588180 Effective search space used: 474588180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)