BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0026.p (163 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312688|ref|YP_003776780.1| response regulator consisting o... 236 1e-63 gi|300313818|ref|YP_003777910.1| two component transcription reg... 137 4e-34 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 114 5e-27 gi|300312680|ref|YP_003776772.1| two component response regulato... 110 4e-26 gi|300309981|ref|YP_003774073.1| two component response regulato... 104 3e-24 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 236 bits (601), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/222 (57%), Positives = 146/222 (65%), Gaps = 61/222 (27%) Query: 1 MKLLLIEDNPPLAHWLT--------------------QILRENKFSV------------- 27 MKLLLIEDNP LAHWL Q+LR+ + V Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 28 DVAR----------------------------GXADDYLVKPFEVRELVARIKVLIRRQT 59 +V R ADDYLVKPFE+RELVARIKVL+RRQT Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 60 PDKAAEIHCGDLSYDSNTRQFAIAGKTLALPAREHDVLEILMLKQGKTVSKNALVNGIFN 119 PDKAAEIHCG+L YDSNTRQFA+ G TLALPAREHDVLE+L+L+QGKTVSK AL+ G+F+ Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 120 LSEEPSADAIEIYISRLRKKLEPSQAAIMTLRGLGYLLKQKD 161 LSEEPSADAIE+YISRLRKKL+ S AAIMTLRGLGYLL+Q+D Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 137 bits (345), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 69/128 (53%), Positives = 86/128 (67%), Gaps = 3/128 (2%) Query: 34 ADDYLVKPFEVRELVARIKVLIRRQTPDKAAEIHCGDLSYDSNTRQFAIAGKTLALPARE 93 ADDYL KPFE+ EL AR+K L+RR ++A + CG LS+D+ +R F G+ LAL RE Sbjct: 95 ADDYLAKPFELEELEARVKALLRRSQNNEAVTVSCGALSFDTVSRTFTYGGELLALTPRE 154 Query: 94 HDVLEILMLKQGKTVSKNALVNGIFNLSEEPSADAIEIYISRLRKKLE---PSQAAIMTL 150 H VLE L+++ G TV K L +F L + S DAIEIYI RLRKKLE P + I TL Sbjct: 155 HAVLEALIVRHGHTVPKEKLFQQVFTLEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTL 214 Query: 151 RGLGYLLK 158 RGLGYLL+ Sbjct: 215 RGLGYLLQ 222 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 114 bits (284), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 56/124 (45%), Positives = 83/124 (66%) Query: 34 ADDYLVKPFEVRELVARIKVLIRRQTPDKAAEIHCGDLSYDSNTRQFAIAGKTLALPARE 93 ADDYLVKPF+ REL ARI+VL+RR + +HC +LS D +R + G+ + L RE Sbjct: 94 ADDYLVKPFDFRELDARIRVLLRRSGGESTNLLHCANLSIDRKSRSATLDGQPIELTRRE 153 Query: 94 HDVLEILMLKQGKTVSKNALVNGIFNLSEEPSADAIEIYISRLRKKLEPSQAAIMTLRGL 153 +LEI+ + G+ +K+ L++ +F + + PSA+++E Y++RLRKKL + I TLRGL Sbjct: 154 VTLLEIIAARPGRIFNKDELMDRLFTVDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGL 213 Query: 154 GYLL 157 GY L Sbjct: 214 GYQL 217 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 110 bits (276), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 57/128 (44%), Positives = 83/128 (64%), Gaps = 1/128 (0%) Query: 34 ADDYLVKPFEVRELVARIKVLIRRQTPDKAAEIHCGDLSYDSNTRQFAIAGKTLALPARE 93 ADDYLVKPF ELVARIK LIRR P + A++ G LS D+ T++ I G+ + L RE Sbjct: 93 ADDYLVKPFATPELVARIKALIRRSAP-QPAQLTVGGLSLDNATKRADIDGRKIELSLRE 151 Query: 94 HDVLEILMLKQGKTVSKNALVNGIFNLSEEPSADAIEIYISRLRKKLEPSQAAIMTLRGL 153 VLE LM + VSK +++ + E+ + +A+E+Y+SR+R K+ S AI T+RG Sbjct: 152 WTVLEYLMQHASRVVSKQQIIDAVLPWGEDFTINAVEVYVSRIRLKIADSGVAIRTIRGF 211 Query: 154 GYLLKQKD 161 GY+L++ + Sbjct: 212 GYMLEKSE 219 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 104 bits (260), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 57/126 (45%), Positives = 76/126 (60%) Query: 34 ADDYLVKPFEVRELVARIKVLIRRQTPDKAAEIHCGDLSYDSNTRQFAIAGKTLALPARE 93 ADDY+ KPF + EL AR++ L RR I G LSYD R I + L L ARE Sbjct: 95 ADDYMAKPFALSELEARVRALTRRGAGGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARE 154 Query: 94 HDVLEILMLKQGKTVSKNALVNGIFNLSEEPSADAIEIYISRLRKKLEPSQAAIMTLRGL 153 +LE+L+ + G+ VSK LV+ + EE S +AIE+Y+ RLRKK+E I T+RGL Sbjct: 155 LGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGL 214 Query: 154 GYLLKQ 159 GY L++ Sbjct: 215 GYCLEK 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 453,178 Number of extensions: 15826 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 21 Length of query: 163 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 85 Effective length of database: 1,250,540 Effective search space: 106295900 Effective search space used: 106295900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)