BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0021.p
         (76 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A...    99   5e-23
gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A...    59   1e-10

>gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate
          ABC transporter ATPase [Herbaspirillum seropedicae
          SmR1]
          Length = 275

 Score = 99.4 bits (246), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/51 (92%), Positives = 48/51 (94%)

Query: 16 DTPAIELDNVSCRFITADGNVTVALRDFSMSVARGEFVAVVGPTGCGKSTT 66
          +TPAIEL NVSCRFITADG  TVALRDFSMSVARGEFVAVVGPTGCGKSTT
Sbjct: 18 ETPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTT 68


>gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate
          ABC transporter ATPase [Herbaspirillum seropedicae
          SmR1]
          Length = 269

 Score = 58.5 bits (140), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 2/51 (3%)

Query: 17 TPAIELDNVSCRFITADGNVT--VALRDFSMSVARGEFVAVVGPTGCGKST 65
          TPA++ DN++C F++ D       A+ +  +++A GEFV+VVGPTGCGKST
Sbjct: 2  TPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKST 52


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 219,816
Number of extensions: 6913
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 2
Length of query: 76
Length of database: 1,619,870
Length adjustment: 47
Effective length of query: 29
Effective length of database: 1,397,325
Effective search space: 40522425
Effective search space used: 40522425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)