BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0017.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312682|ref|YP_003776774.1| iron-regulated protein [Herbasp...   181   2e-47
gi|300312553|ref|YP_003776645.1| PKHD-type hydroxylase [Herbaspi...   100   5e-23
gi|300313662|ref|YP_003777754.1| PKHD-type hydroxylase [Herbaspi...    84   4e-18

>gi|300312682|ref|YP_003776774.1| iron-regulated protein
           [Herbaspirillum seropedicae SmR1]
          Length = 228

 Score =  181 bits (460), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 90/104 (86%)

Query: 1   MLIAIPKLLDAQQLHAVRQLLEQAGPAWVDGRATAGYQGAPVKFNQQIDERSEVAAQCQR 60
           MLI IP+LLD Q L  VR LLEQAG AWVDGR TAGYQGAPVKFNQQIDE SEVA QCQR
Sbjct: 1   MLITIPQLLDTQALQTVRSLLEQAGEAWVDGRVTAGYQGAPVKFNQQIDEHSEVALQCQR 60

Query: 61  IILSALERNPLFISAALPNTVYPPMFNRYGEGMTFGAHVDGSPR 104
           II+SALER+P FISAALPN +YPPMFNRYGEGM FGAHVDGS R
Sbjct: 61  IIVSALERHPRFISAALPNLIYPPMFNRYGEGMHFGAHVDGSVR 104


>gi|300312553|ref|YP_003776645.1| PKHD-type hydroxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score =  100 bits (250), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 68/104 (65%), Gaps = 2/104 (1%)

Query: 1   MLIAIPKLLDAQQLHAVRQLLEQAGPAWVDGRATAGYQGAPVKFNQQIDERSEVAAQCQR 60
           M++ IP++L A+Q+  +R  L +A   WVDGRAT G QGA VK N+Q+ E S +  +   
Sbjct: 1   MMLHIPEVLSAEQVRHIRAELARAD--WVDGRATVGDQGARVKRNRQLPEHSPLGFKLGE 58

Query: 61  IILSALERNPLFISAALPNTVYPPMFNRYGEGMTFGAHVDGSPR 104
           IIL AL +NPLF +AALP    PP+FN Y  G  +G HVDGS R
Sbjct: 59  IILEALRKNPLFFAAALPKKTIPPLFNSYEGGEHYGLHVDGSVR 102


>gi|300313662|ref|YP_003777754.1| PKHD-type hydroxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score = 84.3 bits (207), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 3/105 (2%)

Query: 1   MLIAIPKLLDAQQLHAVRQLLEQAGPAWVDGRATAGYQGAPVKFNQQIDERSEVAAQCQR 60
           M++ + ++L   ++   R LLEQA   W+DGR T+G     +K N+Q+ E+S  A   Q+
Sbjct: 1   MMLHLKQVLSTDEVTRARALLEQA--QWIDGRVTSGSLPDTLKQNRQLPEQSASAVPLQQ 58

Query: 61  IILSALERNPLFISAALPNTVYPPMFNRYGE-GMTFGAHVDGSPR 104
           ++L+AL RN LF SAALP  +  PMFNRYG  G   G HVD + R
Sbjct: 59  MVLAALRRNTLFFSAALPRQIVTPMFNRYGAGGDHLGDHVDVAMR 103


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 487,638
Number of extensions: 15934
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)