BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0016.p (204 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 336 7e-94 gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane i... 94 8e-21 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 93 1e-20 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 78 5e-16 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 70 2e-13 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 336 bits (862), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 156/204 (76%), Positives = 179/204 (87%) Query: 1 LTGTAGQNNLDPEKNRSYELGGKWDVAENLSLNAAAFQITKQNARSLVSTGVYELSGNVR 60 LTGT GQ NLDPEKNRSYELGGKWD+A+ L+L AAAFQITK NARS V+TGVY L+G VR Sbjct: 535 LTGTQGQQNLDPEKNRSYELGGKWDLADGLALTAAAFQITKDNARSQVATGVYALAGKVR 594 Query: 61 VKGARAGATGRINKQWQVAAGYTYLDAQVLSGAASDTAVGKIPTNTPKHTLTTWTTYDVM 120 V GARAGATG I ++WQVAA YTYL A+VL GAA D +VGK+P NTPKHTLTTWTTYD+ Sbjct: 595 VNGARAGATGHITREWQVAANYTYLGAKVLEGAAGDNSVGKVPVNTPKHTLTTWTTYDLA 654 Query: 121 PHWQVGGGATYMSQRYANATNTVQVGGYTRWDATVAYTQKQYDVRFNLFNLTNKMYYDAL 180 PHWQ+GGGA+YMSQRYA+A NTVQVGGYTR+DA +AYT K YD+R NL+NL+NKMYYDAL Sbjct: 655 PHWQIGGGASYMSQRYADAPNTVQVGGYTRYDAMLAYTTKAYDIRLNLYNLSNKMYYDAL 714 Query: 181 IQSDGGRSVPGTGRTGMISVNYRM 204 IQSDGGRSVPG+GRT ++S+ YRM Sbjct: 715 IQSDGGRSVPGSGRTALLSLTYRM 738 >gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane iron monomeric catechols receptor protein [Herbaspirillum seropedicae SmR1] Length = 799 Score = 94.0 bits (232), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 100/209 (47%), Gaps = 11/209 (5%) Query: 5 AGQNNLDPEKNRSYELGGKWDVA-ENLSLNAAAF--QITKQNARSLVSTGVYELSGNVRV 61 A DP+K ++ ELG KWD+ + L+L AA + +IT + + S G Y +G V Sbjct: 593 ADNPKFDPQKAKTAELGTKWDLLNKKLALTAALYRTEITNEVEQDATS-GQYFQTGKKTV 651 Query: 62 KGARAGATGRINKQWQVAAGYTYLDAQVLSGAASDTAVGKIPTNTPKHTLTTWTTYDVMP 121 +G G TG + + AGYTY+ +V SGA + TP+ T+W TY + Sbjct: 652 QGVELGVTGEVTPDLSLTAGYTYMKTKVDSGAIVTASGENTLAYTPRQAFTSWATYRLPK 711 Query: 122 HWQVGGGATYMSQRYANATNTVQ-----VGGYTRWDATVAY-TQKQYDVRFNLFNLTNKM 175 + +GGGA Y+S + N Y +DA Y K D++ NL+N+ NK Sbjct: 712 GFTLGGGARYVSSLVRGSDNPTSGTPKYADSYWVFDAMAGYVVNKNLDLQLNLYNIFNKD 771 Query: 176 YYDALIQSDGGRSVPGTGRTGMISVNYRM 204 Y A I G R PGT R ++ N + Sbjct: 772 YV-AAINKSGYRYTPGTPRAVTLTANLKF 799 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 93.2 bits (230), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 4/200 (2%) Query: 9 NLDPEKNRSYELGGKWDVAE-NLSLNAAAFQITKQNARSLVSTGVYELSGNVRVKGARAG 67 +L PE+ R+ E G K+D E S + F++ + N +S + GV G R GA Sbjct: 505 DLAPEQTRNTEAGAKYDFWEGRASATVSVFRLERDNIKSALPNGVVIPVGKQRTDGAELS 564 Query: 68 ATGRINKQWQVAAGYTYLDAQVLSGAASDTAV---GKIPTNTPKHTLTTWTTYDVMPHWQ 124 + + + W++ AGY +L+A + ++ D V GK T TP+H+ W T ++ Sbjct: 565 FSADLKQGWKLLAGYAWLNAVITESSSFDNGVPFKGKNATLTPRHSGNLWLTRELGEGLV 624 Query: 125 VGGGATYMSQRYANATNTVQVGGYTRWDATVAYTQKQYDVRFNLFNLTNKMYYDALIQSD 184 VGGGA + R+AN NTV + GY DA AY +Y+V+ N+ NL N Y + ++ Sbjct: 625 VGGGANAVGARFANPGNTVTLPGYVTVDAMAAYRTSKYEVQLNIGNLFNTGYIISGHGTN 684 Query: 185 GGRSVPGTGRTGMISVNYRM 204 S+PG R +++ Y M Sbjct: 685 PNLSMPGAPRNVALTLRYHM 704 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 77.8 bits (190), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 92/201 (45%), Gaps = 9/201 (4%) Query: 10 LDPEKNRSYELGGKWDVAENLSL-NAAAFQITKQNARSL--VSTGVYELSGNVRVKGARA 66 DP K R E+G K+ A+ +L AA F++TK N ++ T LSG ++ +G Sbjct: 506 FDPTKARQAEVGIKYQPADGKTLFTAALFELTKTNVQTPDPAHTNFNVLSGEIKSRGLEL 565 Query: 67 GATGRINKQWQVAAGYTYLDAQVLSGAASDTAVGKIPTNTPKHTLTTWTTYDVMPHWQVG 126 A G I K ++A YTY D + + + +GK P P+ + W Y V G Sbjct: 566 EAKGEIVKGLNLSASYTYTDVKNTQNNTA-SLLGKQPILVPRQAASVWADYTVQGGPLAG 624 Query: 127 GGAT----YMSQRYANATNTVQVGGYTRWDATVAYTQKQYDVRFNLFNLTNKMYYDALIQ 182 G Y YA+A NTV+ GG T +DA Y ++ N+ N+TNK Y L + Sbjct: 625 AGIGGGARYTGSNYADAANTVKNGGVTVFDAVFHYNLNRWRYALNISNITNKEYTSCLAE 684 Query: 183 SDGGRSVPGTGRTGMISVNYR 203 RT ++S YR Sbjct: 685 PT-TTCFWAAERTAILSARYR 704 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 7/200 (3%) Query: 8 NNLDPEKNRSYELGGKWD-VAENLSLNAAAFQIT--KQNARSLVSTGVYELSGNVRVKGA 64 N+L P+ +R E G K + + LS A FQ+ +N V G +E SG R +G Sbjct: 522 NDLKPQFSRQVEAGIKSEWLDRRLSTTLAWFQLELFNRNVADPVRPGFFEQSGLERNRGI 581 Query: 65 RAGATGRINKQWQVAAGYTYLDAQVLSGAASDTAVGKIPTNTPKHTLTTWTTYDVMPHWQ 124 G + W V AG+ A+++ A VGK + + + +Y W Sbjct: 582 ELSVEGELAAPWFVRAGWAIQSAKIVQ--AEPKFVGKRASGVSGRGGSLFLSYAPTLGWF 639 Query: 125 VGGGATYMSQRYANATNTVQVGGYTRWDATVAYTQKQYDVRFNLFNLTNKMYYDALIQSD 184 G T RYA+ N +++ YTRWD + Y + + + NL N+ YY++ Sbjct: 640 AELGLTVEGARYADRDNLLELPAYTRWDGKMGYRLDEAEFTLAVTNLANRRYYESATGLS 699 Query: 185 GGRSVPGTGRTGMISVNYRM 204 R PG R +++ Y+ Sbjct: 700 QVR--PGAPRALLLTAAYKF 717 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.128 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 651,256 Number of extensions: 25114 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 16 Length of query: 204 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 123 Effective length of database: 1,236,335 Effective search space: 152069205 Effective search space used: 152069205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)