BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0012.p (337 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 329 2e-91 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 115 7e-27 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 112 3e-26 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 99 6e-22 gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 79 6e-16 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 329 bits (844), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 162/297 (54%), Positives = 215/297 (72%), Gaps = 10/297 (3%) Query: 1 MRASIKINLLKWLIAPLLAVNLIGAGLTYWLAWLPAQDA----------XLTSQIKRVRG 50 M +SI+ +LLKWLIAPLL VNLIGAGLTYWLAWLPAQ A L +Q++ + Sbjct: 4 MHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQE 63 Query: 51 KTSLELTKQAEQMLRSDHFDTMYFVVRDANGETLAGDHNFPQVNQVSEPNEPVTYDGVMN 110 +T+ ELT+QAEQ+LRS+H DT +F VR+ G+ + GD FPQ+ + P+ YDG M Sbjct: 64 RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMR 123 Query: 111 GEQVRIAALYVSIERTPIYIGIAETFRKRNQTHYVILISLLLLDGALTFFSIAIVMIAVN 170 GE VRIAA+ V ++ I++ +AET RKR++ HY IL+S L+LDGALTF SI +V++AV Sbjct: 124 GEPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVR 183 Query: 171 KGLSPLRELRQNLDQRNHDNLTPIEFKDTAEELSPVIGAINSLLENIRKAASAQQNFLAN 230 +GL PL+ L++NL+QR+H L I+ + EL P+I A+N L+ I K AQQNF+A+ Sbjct: 184 RGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMAD 243 Query: 231 VAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQLLALARXK 287 VAHQ+RTPLTGL+LQLE LH +H D+P+TA S +M SSVERM+RQS QLLALAR + Sbjct: 244 VAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSE 300 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 87/310 (28%), Positives = 145/310 (46%), Gaps = 24/310 (7%) Query: 2 RASIKINLLKWLIAPLLAVNLIGAGLTYWLAWLP----AQDAXLTSQIKRV-------RG 50 R S++ LL W+I+P+ A+ +I + + L A D L + + + G Sbjct: 8 RRSVRAYLLAWIISPI-ALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENG 66 Query: 51 KTSLELTKQAEQMLRSDHFDTMYFVVRDANGETLAGDHNFPQVNQVSE-----PNEPVTY 105 + L A ++ +D+ M + + +G+ GD + P ++ P Y Sbjct: 67 ELKASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHIY 126 Query: 106 DGVMNGEQVRIAALYVSI----ERTPIYIGIAETFRKRNQTHYVILISLLLLDGALTFFS 161 + NG VR+AAL+ + R + +AET R+ I L+ AL Sbjct: 127 EDTYNGVPVRVAALFQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQAALLVVI 186 Query: 162 IAIVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKDTAEELSPVIGAINSLLENIRKAA 221 +++ + V + L P+ LR+ LD+R D+L+P+ EL P I A+N L+ +R+ Sbjct: 187 VSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLMARLRRLL 246 Query: 222 SAQQNFLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQLL 281 QQ F+AN +HQ+RTPL L+ QL+ D P E M+ +VER +NQLL Sbjct: 247 DHQQRFVANASHQLRTPLAVLKTQLQ--SGLRGDAPAPVIWQE-MSGTVERATTLANQLL 303 Query: 282 ALARXKNWRA 291 +LA+ + R Sbjct: 304 SLAKVEQIRG 313 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 111/195 (56%), Gaps = 12/195 (6%) Query: 108 VMNGEQVRIAALYVSIERTPIY-----------IGIAETFRKRNQTHYVILISLLLLDGA 156 +++G VRIA L V + R+ + + ET KR Q I+ ++L Sbjct: 22 ILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGETLEKRAQLANEIIKGVILPQFI 81 Query: 157 LTFFSIAIVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKDTAEELSPVIGAINSLLEN 216 + ++A+V A+++GLSPL EL+Q + R D+L+PI+ EE+SP++ ++N +L Sbjct: 82 ILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLAR 141 Query: 217 IRKAASAQQNFLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQ 276 + + + Q+ F+A+ AHQ++TPL G+R+Q E L R D+ + S E + S E R Sbjct: 142 LSQTIAIQKRFIADAAHQMKTPLAGMRMQSE-LALRQDDQVDVRRSLEQLAKSSETATRL 200 Query: 277 SNQLLALARXKNWRA 291 NQLL+LAR +N ++ Sbjct: 201 VNQLLSLARAENQQS 215 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 87/312 (27%), Positives = 143/312 (45%), Gaps = 23/312 (7%) Query: 3 ASIKINLLKWLIAPLLAVNLIGAGLTYW-------LAW---LPAQDAXLTSQIKRVRGKT 52 S++ L++WL+ PL + + A Y+ LA+ L A L ++ V G Sbjct: 9 GSLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHV 68 Query: 53 SLELTKQAEQMLRSDHFDTMYFVVRDANGETLAGDHNFPQVNQVSEPNE--PVT---YDG 107 + ++ A +D+ +Y+ V NGE ++G + P V + +E P Y Sbjct: 69 TADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQA 128 Query: 108 VMNGEQVRIAAL----YVSIERTPIYIGIAETFRKRNQTHYVILISLLLLDGALTFFSIA 163 + + VRIAAL Y R I + ET RN IL L G L + Sbjct: 129 DYHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAAL 188 Query: 164 IVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKDTAEELSPVIGAINSLLENIRKAASA 223 +V AV L PL +L+ ++ R +L+ + +E+ P++ A+N + ++ SA Sbjct: 189 LVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISA 248 Query: 224 QQNFLANVAHQIRTPLTGLRLQLEW----LHQRHADEPETAHSTELMTSSVERMVRQSNQ 279 Q+ F+A+ +HQ+RTPLT L+ Q E L + D E E M + + V +N+ Sbjct: 249 QRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANR 308 Query: 280 LLALARXKNWRA 291 LL LAR ++ A Sbjct: 309 LLTLARAEHGAA 320 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 78.6 bits (192), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 167 IAVNKGLSPLRELRQNLDQRNHDNLTPIEFKDTAEELSPVIGAINSLLENIRKAASAQQN 226 +AV++GL+P+R+ + R+ ++L P+ +E+ P+ A+N LL ++ A Q+ Sbjct: 159 VAVSRGLAPVRKAAAEVAARDMNSLQPLADVGMPQEIQPLTHALNDLLARLKHATETQRA 218 Query: 227 FLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQLLALARX 286 F+A+ AH++RTPLT LRLQ + L +R DE E + + + +ER +QLL LAR Sbjct: 219 FVADAAHELRTPLTALRLQTQ-LAERAVDEEERRAAFADLKNGLERTTHLVHQLLTLARQ 277 Query: 287 K 287 + Sbjct: 278 E 278 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 923,944 Number of extensions: 34129 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 8 Length of query: 337 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 251 Effective length of database: 1,212,660 Effective search space: 304377660 Effective search space used: 304377660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)