BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0207.0011.p (112 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 179 3e-47 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 88 2e-19 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 83 7e-18 gi|300310593|ref|YP_003774685.1| phosphate regulon two-component... 82 9e-18 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 80 3e-17 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 179 bits (455), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 82/109 (75%), Positives = 95/109 (87%) Query: 1 MKGDRFMLRDLIDNLVDNAVRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIF 60 ++GDRF+L DLIDNL+DNAVRYSPP TVTV C E++DAT+L+VEDSGPGIAPEHRELIF Sbjct: 345 LRGDRFLLSDLIDNLIDNAVRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIF 404 Query: 61 DRFYRVNDKIAGSGLGLAIVRDIAKDHGGEITLTSGEADCGTVFTVRFP 109 DRFYR NDK+AGSGLGLAIVR+IA DHGG I++ E GT+FTVRFP Sbjct: 405 DRFYRANDKVAGSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVRFP 453 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 87.8 bits (216), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 1/110 (0%) Query: 1 MKGDRFMLRDLIDNLVDNAVRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIF 60 + G+ L ++ NL+DNA+RY+P VTV ++ ++TV D+GPGI E RE +F Sbjct: 346 VNGNEAQLMGMLMNLIDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVF 405 Query: 61 DRFYR-VNDKIAGSGLGLAIVRDIAKDHGGEITLTSGEADCGTVFTVRFP 109 +RFYR GSGLGLAIVR+I + G I L + G V TV P Sbjct: 406 ERFYRNAAPDQPGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATVSLP 455 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 82.8 bits (203), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 9/117 (7%) Query: 1 MKGDRFMLRDLIDNLVDNAVRYSPPQSTVTVSCREQED-----ATLLTVEDSGPGIAPEH 55 ++ + +L +L+ NL+DNA+RY+P VT+ R Q LL VEDSGPGI Sbjct: 361 IEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAAE 420 Query: 56 RELIFDRFYRV----NDKIAGSGLGLAIVRDIAKDHGGEITLTSGEADCGTVFTVRF 108 RE +F+ FYR + G+GLGL+IVR+IA H +TL + G V + F Sbjct: 421 REKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRIVF 477 >gi|300310593|ref|YP_003774685.1| phosphate regulon two-component sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 436 Score = 82.0 bits (201), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 5/113 (4%) Query: 1 MKGDRFMLRDLIDNLVDNAVRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIF 60 +KG+ LR NLV NAVRY+P +++ + E V+D+G GI+PEH + Sbjct: 313 LKGNAEELRSAFTNLVTNAVRYTPEGGRISLRWQSDEQGAHFAVQDTGIGISPEHISRLT 372 Query: 61 DRFYRVND----KIAGSGLGLAIVRDIAKDHGGEITLTSGEADCGTVFTVRFP 109 +RFYRV+ + G+GLGLAIVR + H + + S D G+ FTV FP Sbjct: 373 ERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLEIAS-VPDHGSTFTVHFP 424 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 80.5 bits (197), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 12/120 (10%) Query: 1 MKGDRFMLRDLIDNLVDNAVRYSPPQSTVTVSCREQEDA----TLLTVEDSGPGIAPEHR 56 + G+ MLR+L+ NL+DNA+ Y+P V+ R + D +L VED+GPGI R Sbjct: 258 ITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAER 317 Query: 57 ELIFDRFYRV---NDKIAGSGLGLAIVRDIAKDHGGEITLTSGEADC-----GTVFTVRF 108 +F+RFYR+ +G GLGLAIVR+IA+ H + +TS G VF V F Sbjct: 318 ANVFERFYRILGTPSTGSGLGLGLAIVREIAQQHEAALEITSNPRSTDPKYPGCVFRVSF 377 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 360,905 Number of extensions: 14554 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 29 Length of query: 112 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 39 Effective length of database: 1,274,215 Effective search space: 49694385 Effective search space used: 49694385 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)