BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0009.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312669|ref|YP_003776761.1| Mg(2+) transport ATPase [Herbas...   181   5e-47
gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbas...    61   7e-11

>gi|300312669|ref|YP_003776761.1| Mg(2+) transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score =  181 bits (458), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 80/91 (87%), Positives = 89/91 (97%)

Query: 6   EIGRFMVFFGPISSIFDISTFALMWFVFGANSPDHQTLFQSGWFIEGLLSQTLIVHMIRT 65
           +IGRFMVFFGPISSIFDI+TFALMWF+FGA+SP+HQTLFQSGWFIEGLLSQTLIVHMIRT
Sbjct: 786 DIGRFMVFFGPISSIFDITTFALMWFIFGASSPEHQTLFQSGWFIEGLLSQTLIVHMIRT 845

Query: 66  KRIPFFQSRASWPLMGMTLVIMAIGIILPIN 96
           +RIPFFQSRASWPLMGMTL+IMAIGI +P+ 
Sbjct: 846 RRIPFFQSRASWPLMGMTLIIMAIGIAIPMT 876



 Score =  106 bits (265), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 65/86 (75%)

Query: 91  IILPINDAPALRAAXGDGINDAPALRAADIGISVDTAVDIAKEAADLILLEKSLMVLEEG 150
           I+  ++D   +    GDGINDAPALRAADIGISVDTAVDIAKEAADLILLEKSLMVLEEG
Sbjct: 647 IVRVLHDRGHVVGFMGDGINDAPALRAADIGISVDTAVDIAKEAADLILLEKSLMVLEEG 706

Query: 151 VLEGRKVFXHPVFYCVPRADTAMGQL 176
           VLEGRK F + + Y    A +  G +
Sbjct: 707 VLEGRKTFANMLKYIKMTASSNFGNV 732


>gi|300311691|ref|YP_003775783.1| cation transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 853

 Score = 61.2 bits (147), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 91  IILPINDAPALRAAXGDGINDAPALRAADIGISVDT-AVDIAKEAADLILLEKSLMVLEE 149
           I+  + D   + A  GDG+NDAPAL+AA +GI++     D+A+EA  LILL+ +   + E
Sbjct: 571 IVAALKDDGEIIAMTGDGVNDAPALKAAHVGIAMGARGTDVAREAGSLILLDDNFASIVE 630

Query: 150 GVLEGRKVF 158
           G+L GR++F
Sbjct: 631 GILMGRRIF 639


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 620,861
Number of extensions: 24130
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 3
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)