BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0007.p
         (243 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312669|ref|YP_003776761.1| Mg(2+) transport ATPase [Herbas...   327   6e-91

>gi|300312669|ref|YP_003776761.1| Mg(2+) transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score =  327 bits (838), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 155/195 (79%), Positives = 176/195 (90%)

Query: 1   MNLDLLKETFANFIRARGMDRHFHRLGVDMFRSSPTTKEVPQTIAQSLVSSSQTDLGALL 60
           MNL+LLKETF +FIRARGMDRHF RLG+DMFRS+P TKEVPQT+A+ L  +S++ +  LL
Sbjct: 1   MNLNLLKETFVSFIRARGMDRHFRRLGMDMFRSAPVTKEVPQTLAEQLSDASRSHVQDLL 60

Query: 61  RQLGSRTDGLTEQEADAIRLEVGPNEVEHEKPLTWWVHLWHCYKNPFNLLLTVLAAVSYY 120
           ++L SR DGLTE EADAIR   GPNEVEHEKPLTW+VHLWHCYKNPFNLLLT+LAAVS+Y
Sbjct: 61  QRLHSRPDGLTESEADAIRAHSGPNEVEHEKPLTWYVHLWHCYKNPFNLLLTLLAAVSFY 120

Query: 121 TEDMKAAIVIGTMVVVSTLMRFIQESRSNTAADKLKEMVSNTATVVRHDIVQDIAEEAQR 180
           TEDMKAAIVIGTMVVVSTL+RF+QE+RSNTAADKLK MVSNTATV+RHD V++IA EAQR
Sbjct: 121 TEDMKAAIVIGTMVVVSTLLRFVQEARSNTAADKLKAMVSNTATVMRHDQVEEIAAEAQR 180

Query: 181 YFDVTLHPKGARRVR 195
           YFDVTLHPKGARRV 
Sbjct: 181 YFDVTLHPKGARRVE 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 574,756
Number of extensions: 19236
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,226,865
Effective search space: 196298400
Effective search space used: 196298400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)