BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0207.0001.p
         (293 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312664|ref|YP_003776756.1| glycine rich transmembrane prot...   242   2e-65
gi|300312665|ref|YP_003776757.1| membrane protein [Herbaspirillu...   115   5e-27

>gi|300312664|ref|YP_003776756.1| glycine rich transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 283

 Score =  242 bits (618), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/167 (72%), Positives = 140/167 (83%), Gaps = 1/167 (0%)

Query: 28  FAWLAIGXGAGAQN-FVAVPALTSHVTDQAGMLDEQQRRTLDQVLTDYETRTGSQIAILL 86
            AWLA+   A A +  V VP L+ HV DQ  +L  QQR+ L+ VLT+ E RTGSQI +LL
Sbjct: 11  LAWLALAGPARADDGLVPVPPLSGHVIDQVHLLQAQQRQALEGVLTEIEQRTGSQIGVLL 70

Query: 87  ISSTAPEAIEQYGIRVADAWKLGRKGVDDGVILIVAKDNTKALRRLRIEAGRGVQGSLTD 146
           +SSTAPEAIEQY IRVADAWKLGRKG+DDGVILIVAKDN K+LRRLRIEAGRGVQGSLTD
Sbjct: 71  MSSTAPEAIEQYSIRVADAWKLGRKGIDDGVILIVAKDNPKSLRRLRIEAGRGVQGSLTD 130

Query: 147 AQSKRILEDVIAPHFRQNDYYGGLAAGISALTSLLDRENLPPPPXRA 193
           AQSKRILEDVIAPHFRQND+YGGLAAG++A+T+LL++E LPP   +A
Sbjct: 131 AQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLPPSKRQA 177


>gi|300312665|ref|YP_003776757.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 177

 Score =  115 bits (287), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 4/106 (3%)

Query: 192 RARAHELFSHYRIWDTEENSGVLIYLNLADHRVEIVTDRTVGRALKRVDWESVCSTMTRS 251
           R RAHELFSHYRIWDTEEN GVL+Y+NLAD +VEIV DR V   + R  W+ VC  MT  
Sbjct: 72  RQRAHELFSHYRIWDTEENCGVLVYINLADRKVEIVADRGVNARVTREQWQQVCRAMTAG 131

Query: 252 FADGIYHDGTLEALAQLNRLLALHFPQ----TSQHKNEISNRPLML 293
           +A G Y   TL+ALA L+ +L    P+         NE+S++PL+L
Sbjct: 132 YAQGEYEASTLQALASLHEILRKVLPREPDAAGDMHNELSDKPLLL 177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 939,999
Number of extensions: 38908
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 209
Effective length of database: 1,222,130
Effective search space: 255425170
Effective search space used: 255425170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)