BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0205.0003.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310129|ref|YP_003774221.1| type III secretion HrcR transme...   227   3e-61
gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein ...    81   4e-17

>gi|300310129|ref|YP_003774221.1| type III secretion HrcR
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  227 bits (579), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 121/129 (93%)

Query: 21  RATPLLVKAQESFEPMRKFMLKFSKPEQRELFLASARKLWPKEAARDARASDALILIPAF 80
           R  P+L +AQ++F+P+RKFMLK S  EQRE+FLASA+KLWPKEAA+DA+ +DALILIPAF
Sbjct: 91  RTVPILERAQDAFDPLRKFMLKMSHAEQREMFLASAKKLWPKEAAKDAQPTDALILIPAF 150

Query: 81  VVSELQAGYEIGFLIYIPFVVIDLLVSNLLMALGMQQVSPQTITVPLKLLLFTLVGGWAK 140
           VVSELQ GYEIGFLIYIPFVVIDLL+SNLLMALGMQQVSPQTIT+PLKLLLFTLVGGWAK
Sbjct: 151 VVSELQTGYEIGFLIYIPFVVIDLLISNLLMALGMQQVSPQTITIPLKLLLFTLVGGWAK 210

Query: 141 LLNALAMSY 149
           LLNALAMSY
Sbjct: 211 LLNALAMSY 219


>gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein
           FliP [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 80.9 bits (198), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 78/116 (67%), Gaps = 4/116 (3%)

Query: 34  EPMRKFMLKFSKPEQRELFLASARKLWPKEAARDARASDALILIPAFVVSELQAGYEIGF 93
           +P+++FMLK    + RE  LA   KL    A +        +L+PAFV SEL+  ++IGF
Sbjct: 132 QPLKEFMLK----QTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGF 187

Query: 94  LIYIPFVVIDLLVSNLLMALGMQQVSPQTITVPLKLLLFTLVGGWAKLLNALAMSY 149
            I++PF++ID++V+++LM++GM  +SP  +++P KL+LF LV GW  L+ +LA S+
Sbjct: 188 AIFLPFLIIDMVVASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSF 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 328,870
Number of extensions: 11162
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)