BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0205.0002.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310131|ref|YP_003774223.1| Type III secretion HprX protein...   345   1e-96

>gi|300310131|ref|YP_003774223.1| Type III secretion HprX protein
           [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  345 bits (886), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 163/203 (80%), Positives = 187/203 (92%)

Query: 20  ALPAALPTFYFVQKTPPDFLFAGMLAFKEAMIGLMFGVLMAIPMWVVQSVGSIFDMQRSP 79
           +LPAALPTF FVQ+T PD L  G++ FKEAMIGLMFGVLMAIP+WVVQS+GSIFD QRSP
Sbjct: 51  SLPAALPTFLFVQRTAPDMLTTGVMVFKEAMIGLMFGVLMAIPLWVVQSIGSIFDSQRSP 110

Query: 80  IQIQANNSTVDRDASAIGAMLIQAVVVLMVQAGLFSALARILIESYAVWPAFALMPPFEP 139
           IQIQANN+TVDRDASA+GA+L+QAVV++MVQAG+F+ +ARILIESYAVWPAF L PPFEP
Sbjct: 111 IQIQANNATVDRDASAVGALLLQAVVLVMVQAGMFAGMARILIESYAVWPAFTLAPPFEP 170

Query: 140 GHFDVLVKRFGDLLWYVVVYGAPVIVPLLLIEFGFAVVGVFASNLQVSFASAPIKSLTGL 199
           GHFDVLVKRFG+LLWY+VVYGAPV++PL+LIEFGFA+VGVFASNLQVSFASAP+KSL GL
Sbjct: 171 GHFDVLVKRFGELLWYIVVYGAPVLIPLVLIEFGFAIVGVFASNLQVSFASAPVKSLVGL 230

Query: 200 LILLAYWSTLSHYVTNDFAHLXE 222
           LI+L YWST SHYV  DFAHL +
Sbjct: 231 LIMLLYWSTFSHYVAGDFAHLLD 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 720,259
Number of extensions: 29102
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)