BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0205.0001.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310132|ref|YP_003774224.1| type III secretion HrcU transme...   432   e-122
gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB tra...   147   1e-36

>gi|300310132|ref|YP_003774224.1| type III secretion HrcU
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score =  432 bits (1112), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/296 (68%), Positives = 241/296 (81%)

Query: 2   MTTAGILLLVVFCTCFLICILVSVAAHWGQFGALIAPEALTPKFDKLNPVNGVKQLFSKK 61
           +T A ILL V F    +IC L +V  HWGQFG LIA EAL PK DKLNPVNG+KQ+FSKK
Sbjct: 76  LTAALILLAVAFFAVLVICPLAAVVGHWGQFGMLIATEALEPKLDKLNPVNGIKQIFSKK 135

Query: 62  KLVELLTTIGKATLIGGIVYSLTRSHLGTIISLSNGEPKDVYDVFVELLRSIFHVIVVVC 121
           KLVEL  T+GKA LI G++YS   S LG I +L+ GEPKDVY+ FV LLR+IFH+I+VVC
Sbjct: 136 KLVELFITVGKAALIAGMMYSAIHSQLGAIFTLAGGEPKDVYEAFVTLLRNIFHLIIVVC 195

Query: 122 LLLGLIDYAIQHHFHKKELMMDKEEIKKEHKESEGDPLIKNQRKRLARQWANEGPEAKTE 181
           L+LG+IDYA+Q +FHKK+LMMD+EEIK+E KESEGDP++K QRK+LARQWANE P AKTE
Sbjct: 196 LVLGVIDYAVQKYFHKKDLMMDQEEIKREFKESEGDPMVKGQRKQLARQWANEAPAAKTE 255

Query: 182 DANAVVVNPTHFAVALYYDAAELMVPVVLAKGKDQVAQAMIRRARECGIPVIRHVWLART 241
            ANAVVVNPTHFAVA++YDA E MVP+VLAKG+D++AQAMI RA  CGIPVIRHVWLART
Sbjct: 256 KANAVVVNPTHFAVAMFYDADEAMVPLVLAKGRDEIAQAMIARAHACGIPVIRHVWLART 315

Query: 242 LYATCPPDTAIPKASYEAVAQVYAVVHELMASDRSGQDVELESHGEPPGASXTGRG 297
           LYATC  D  +P++SY+AVAQVYAVVHEL+AS    ++VELES GEPP      +G
Sbjct: 316 LYATCQDDMPVPRSSYQAVAQVYAVVHELVASGEVQREVELESLGEPPERDTLPKG 371


>gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  147 bits (370), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 152/299 (50%), Gaps = 8/299 (2%)

Query: 10  LVVFCTCFLICILVSVAAHWGQFGALIAPEALTPKFDKLNPVNGVKQLFSKKKLVELLTT 69
           + V    FL+  L ++AA     G L    +L PKF KLNP++G   +FS   LVEL   
Sbjct: 91  IAVIPLAFLMT-LAAMAAPLTLGGWLFNVSSLAPKFSKLNPISGFANMFSVNSLVELGKA 149

Query: 70  IGKATLIGGIVYSLTRSHLGTIISLSNGEPKDVYDVFVELLRSIFHVIVVVCLLLGLIDY 129
           + K  L+G + +   RS L  ++ L     K       +LL   F  +V   + + ++D 
Sbjct: 150 VLKTLLVGTVAWVTIRSQLDAVMGLGVESLKTAGAHAAQLLWISFITMVSALIFIAVLDV 209

Query: 130 AIQHHFHKKELMMDKEEIKKEHKESEGDPLIKNQRKRLARQWANEGPEAKTEDANAVVVN 189
             Q   + ++L M +EE+K+EHKESEGDP IK + + + R  A     A+   A+ VV N
Sbjct: 210 PYQLWNYGRKLRMTREEVKQEHKESEGDPHIKGKIRAMQRAMARRRMMAEVPTADVVVTN 269

Query: 190 PTHFAVALYYDAAELMVPVVLAKGKDQVAQAMIRRARECGIPVIRHVWLARTLYATCPPD 249
           PTH+AVAL Y   ++  P V+AKG D++A  +   ARE  +P++    LAR L+      
Sbjct: 270 PTHYAVALKYSEGKMGAPKVVAKGSDEIAAKIRELAREHRVPLLEAPPLARALHTHTEIG 329

Query: 250 TAIPKASYEAVAQVYAVVHELMASDRSGQDVELESHG-------EPPGASXTGRGRRRR 301
             IP+A Y AVA+V A V +L    + G    +E  G       +P  A    RG +RR
Sbjct: 330 DEIPEALYTAVAEVLAYVFQLRTYGQFGGTRPVEPTGLEVPKELDPLTAPKKPRGSQRR 388


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 811,148
Number of extensions: 29395
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)