BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0204.0014.p
         (405 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311240|ref|YP_003775332.1| CBS-domain-containing membrane ...   536   e-154

>gi|300311240|ref|YP_003775332.1| CBS-domain-containing membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  536 bits (1382), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 277/393 (70%), Positives = 319/393 (81%), Gaps = 2/393 (0%)

Query: 5   MSDSILQWLRSFIPQKTAVDRFERMRASAGALFGILLTGLLSYVILPHSAATVWLIAPMG 64
           M DSI  W +SFIP K  VDRFERMR+ AG+LFGILL G++SY +LPH A T+WLIAPMG
Sbjct: 3   MPDSISLWFKSFIPAKANVDRFERMRSCAGSLFGILLVGMVSYAVLPHKAGTIWLIAPMG 62

Query: 65  ASAVLLFAVPSSPLAQPWSIIGGNLVAALVGVSCAKLIGEPALAAALAIALAIACMFALR 124
           ASAVLLFAVPSSPLAQPWSIIGGNL AAL+GV+CAKL+ EPALAAALAIALAI  MF LR
Sbjct: 63  ASAVLLFAVPSSPLAQPWSIIGGNLCAALIGVTCAKLVPEPALAAALAIALAIGAMFYLR 122

Query: 125 CIHPPSGAVALTAVLGGPAVHGMGYGFVLSPVLLNSFLLLAMALFFNNATRRRYPHAQQS 184
           CIHPPSGAVALTAVLGGPAV  MGYGFVLSPVLLNS LLLA ALFFNNA+ RRYPHAQQS
Sbjct: 123 CIHPPSGAVALTAVLGGPAVQAMGYGFVLSPVLLNSVLLLATALFFNNASGRRYPHAQQS 182

Query: 185 EHRNNVHQTHDVAPSSRLGFTHEDLDAVLRRYNQVLDISRDDLEEILQQTEMEAYRRRFG 244
               + H T D  P +RLGF+HEDLD VL+RYNQVLDI RDDLEEI  QTEM AY RRFG
Sbjct: 183 A-APHPHHTRDELPITRLGFSHEDLDEVLKRYNQVLDIGRDDLEEIFLQTEMRAYHRRFG 241

Query: 245 ETVCADIMSADVVAVEFSTELAEAWRQMRSHRLQALPVVDRARRVIGIVTKTDFLQHAGT 304
           +T+CA +MS DVVAVEF+T L EAWR +++HRL+ALPV+DR R VIGI++++DFL+HAG 
Sbjct: 242 QTLCASVMSRDVVAVEFATGLDEAWRLLQAHRLRALPVIDRGRHVIGIISRSDFLEHAGV 301

Query: 305 HDYEKLGDKLRSFLQRTPHTHSIKAEVVGQIMSKSVKTASVHLPIVQLVPLMADEGVHQI 364
             +  L  +LR+ L R P  HS K EVVGQIMS+ V TA V  P+++LVP MAD G+HQI
Sbjct: 302 EVHTGLTAQLRALLHRVPLLHSDKPEVVGQIMSRPVVTAQVDTPLLELVPRMAD-GLHQI 360

Query: 365 PVIDDERRLAGMVTQSDMVAALYVNNLTRARGG 397
           PV+  + +LAGM+TQSDM+AALY  NL  AR G
Sbjct: 361 PVVQADGKLAGMLTQSDMIAALYEKNLAAARSG 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,192,898
Number of extensions: 46377
Number of successful extensions: 259
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,207,925
Effective search space: 384120150
Effective search space used: 384120150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)