BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0204.0005.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmemb...   152   4e-39
gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein ...   121   1e-29

>gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 780

 Score =  152 bits (385), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 92/105 (87%), Gaps = 4/105 (3%)

Query: 1   VVDHLKEQGEPNYIEGILEGGVADDADGAVGGAAGGSEGD----ELYDQAVAVVLKNRRA 56
           VV+HLK QGEPNYIEGILEGGV +DADG   GAA G  G     E+YDQAVAVVLK+RRA
Sbjct: 670 VVEHLKSQGEPNYIEGILEGGVLEDADGGGSGAAAGGAGGGEGDEMYDQAVAVVLKHRRA 729

Query: 57  SISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAG 101
           SISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAG
Sbjct: 730 SISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAG 774


>gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 524

 Score =  121 bits (303), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 74/104 (71%), Gaps = 3/104 (2%)

Query: 1   VVDHLKEQGEPNYIEGILEGGVADD---ADGAVGGAAGGSEGDELYDQAVAVVLKNRRAS 57
           VV++LK  GEP YIE IL   +++D   AD    G  G  E D LYD+AVA VLK RRAS
Sbjct: 416 VVEYLKSFGEPRYIEEILAPPISEDTAQADMFANGEGGDPEADPLYDEAVAFVLKTRRAS 475

Query: 58  ISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAG 101
           IS VQR LRIGYNRAARL+EQME +G++S M  NG+R+ILVP  
Sbjct: 476 ISSVQRQLRIGYNRAARLVEQMETAGVLSAMSRNGSRDILVPPS 519


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.132    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 258,735
Number of extensions: 7230
Number of successful extensions: 21
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 2
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 123 (52.0 bits)