BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0203.0008.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313959|ref|YP_003778051.1| DNA topoisomerase III protein [...   516   e-148

>gi|300313959|ref|YP_003778051.1| DNA topoisomerase III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 892

 Score =  516 bits (1330), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 246/264 (93%), Positives = 257/264 (97%)

Query: 1   MSKTLIIAEKPSVANDIAKTLGGFTKHDEYFESDEYVLSSAVGHLLEIAVPEEYDVKRGK 60
           MSKTLIIAEKPSVANDIAKTLGGFTKHDEYFESD+Y+LSSAVGHLLEIAVPEEYDVKRGK
Sbjct: 1   MSKTLIIAEKPSVANDIAKTLGGFTKHDEYFESDQYILSSAVGHLLEIAVPEEYDVKRGK 60

Query: 61  WTFTHLPMIPPHFALNPIAKTESRLKALSKLIKRKDVTGLINACDAGREGELIFRLIAQY 120
           W+FTHLPMIPPHFALNPIAKTESRLK LSKLIKRKDVT LINACDAGREGELIFRLIAQY
Sbjct: 61  WSFTHLPMIPPHFALNPIAKTESRLKVLSKLIKRKDVTTLINACDAGREGELIFRLIAQY 120

Query: 121 TKAKQPVQRLWLQSMTPGAIRDGFANLRKDEEMLPLADAARCRSEADWLIGINGTRAMTA 180
           TKAKQPV+RLWLQSMTPGAIR+GFA+LR DEEMLPLA+AARCRSEADWLIGINGTRAMTA
Sbjct: 121 TKAKQPVKRLWLQSMTPGAIREGFAHLRDDEEMLPLANAARCRSEADWLIGINGTRAMTA 180

Query: 181 FNSKEGGFYLTTVGRVQTPTLSIVVEREEKIKKFVSRDFWEVRADFVCAAGIYEGRWLDK 240
           FNSKEGGFYLTTVGRVQTPTLSIVVEREEKIKKFV RD+WEV A+FVCAAGIY+GRWLDK
Sbjct: 181 FNSKEGGFYLTTVGRVQTPTLSIVVEREEKIKKFVPRDYWEVHAEFVCAAGIYKGRWLDK 240

Query: 241 QHKKDENDPEKRPERLWSKAAAES 264
            HKKDE DPEKRPERLWSKAAA+S
Sbjct: 241 GHKKDEADPEKRPERLWSKAAADS 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 883,685
Number of extensions: 33184
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)