BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0203.0007.p
         (276 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313959|ref|YP_003778051.1| DNA topoisomerase III protein [...   462   e-131

>gi|300313959|ref|YP_003778051.1| DNA topoisomerase III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 892

 Score =  462 bits (1188), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/245 (91%), Positives = 232/245 (94%), Gaps = 2/245 (0%)

Query: 1   MAPGLFDLTSLQREANSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRHLPEDYLQTVKD 60
           M+PGLFDLTSLQREANSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRHLPEDY+ TVKD
Sbjct: 286 MSPGLFDLTSLQREANSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRHLPEDYINTVKD 345

Query: 61  TMEALSENNNYHQFSKQILKQGWVKPNKRIFDNTKISDHFAIIPTTQVPKNLSEPEQKLY 120
           TMEAL+ENNNYHQFSKQILKQGWVKPNKRIFDNTKISDHFAIIPTTQVPKNLSEPEQKLY
Sbjct: 346 TMEALAENNNYHQFSKQILKQGWVKPNKRIFDNTKISDHFAIIPTTQVPKNLSEPEQKLY 405

Query: 121 DLVTRRFMAVFFPAAEFQVTTRFTEVSGHQFKTEGKVMTNPGWLAIYGKDV-VDEKD-EN 178
           DLVTRRFMAVFFP AEFQVTTR+TEVSGHQFK+EGKVM NPGWLAIYGK V  D+KD E 
Sbjct: 406 DLVTRRFMAVFFPPAEFQVTTRYTEVSGHQFKSEGKVMINPGWLAIYGKQVEEDDKDKEG 465

Query: 179 SGTLVAVAKDEKVKTDKITANGLVTKPPARYTEATLLSAMEGAGKLIDSDELREAMAGKG 238
            G LVAVA  EKVKTDK+TANGLVTKPPARYTEATLLSAMEGAGKL+DSDELREAMAGKG
Sbjct: 466 GGNLVAVAPGEKVKTDKVTANGLVTKPPARYTEATLLSAMEGAGKLVDSDELREAMAGKG 525

Query: 239 LGTPG 243
           LGTP 
Sbjct: 526 LGTPA 530


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 788,957
Number of extensions: 29006
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,222,130
Effective search space: 234648960
Effective search space used: 234648960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)