BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0203.0006.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313958|ref|YP_003778050.1| exodeoxyribonuclease III protei...   455   e-129
gi|300312415|ref|YP_003776507.1| exodeoxyribonuclease III protei...    86   4e-18

>gi|300313958|ref|YP_003778050.1| exodeoxyribonuclease III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  455 bits (1170), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 209/256 (81%), Positives = 232/256 (90%)

Query: 7   LLKIHSWKXNGIRSAAKKGFFEWMAKESADFICVQELKAQEADMSPEFLAPEGYVGHFHY 66
           + KI S   NGIRSAAKKGFFEW+ KE+ DF+CVQELKAQ ADM+ +FLAP GYVGHFHY
Sbjct: 1   MPKIVSANLNGIRSAAKKGFFEWLQKEAPDFVCVQELKAQAADMTEQFLAPAGYVGHFHY 60

Query: 67  AEKKGYSGVGVYSKRTPNAVRIGFGVQEFDDEGRYVECDFGDLTVISLYCPSGSSSEERQ 126
           A+KKGYSGVGVYS+R P++VRIGFG  EFDDEGRYVECD+GDLTVISLY PSGSSSEERQ
Sbjct: 61  AQKKGYSGVGVYSRRQPDSVRIGFGNTEFDDEGRYVECDYGDLTVISLYAPSGSSSEERQ 120

Query: 127 QAKFRFMEVFLPHLQELKNSGREIVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLT 186
           +AKFRFME FLPHL EL+ SGRE+VICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAW+T
Sbjct: 121 EAKFRFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMT 180

Query: 187 RVFDELGLVDVYRTIHPETTGDAYTWWSNRGQAWANNVGWRIDYHIATAGIAKKAKTAAI 246
           R+FD+LGLVDVYR +HPETTG+AYTWWSNRGQAWANNVGWRIDYH++T GIA KA +AAI
Sbjct: 181 RIFDQLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAKAVSAAI 240

Query: 247 YKTARFSDHAPLTIDY 262
           YK  RFSDHAPLT+ Y
Sbjct: 241 YKEQRFSDHAPLTVVY 256


>gi|300312415|ref|YP_003776507.1| exodeoxyribonuclease III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score = 85.5 bits (210), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 18/259 (6%)

Query: 8   LKIHSWKXNGIRSAAKKGFFEWMAKESADFICVQELKAQEADMSPEFLAPEGYVGHFHYA 67
           +KI +W  N ++    +   +W+ +   D +C+QE K  +       +A  GY+  F  +
Sbjct: 1   MKIATWNVNSLKVRLPQ-VLKWLEENPVDVLCLQETKLTDDKFPAAEIAAAGYLVEF--S 57

Query: 68  EKKGYSGVGVYSKRTPNAVRIGFGVQEFDDEGRYVECDFGDLTVISLYCPSGSSSE-ERQ 126
            +K Y+GV + S+   N V +       D++ R +      +  +  Y P+G S E E+ 
Sbjct: 58  GQKTYNGVAILSRHPMNDV-VKNNPLFPDEQQRIIAATIEGVRYVCAYIPNGQSLESEKY 116

Query: 127 QAKFRFMEVFLPHLQELKNSGREIVICGDWNIAHKEIDLKN---WKSNQKNSGFLPEERA 183
             K  ++      L + K     + + GD+NIA ++ D+ +   W+     S   PE  A
Sbjct: 117 PYKLNWLAALHEWLAQEKAKNPRLALLGDYNIAPEDRDVHDPVAWQGQVLVSE--PEREA 174

Query: 184 WLTRVFDELGLVDVYRTIHPETTGDAYTWWSNRGQAWANNVGWRIDYHIATAGIAKKAKT 243
           +  R    LGL D YR    E     Y+WW  R   +  N G RID+ + +  +  +   
Sbjct: 175 F--RKLQALGLTDSYRLF--EQPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPRCTA 230

Query: 244 AAIYKTAR----FSDHAPL 258
             I K  R     SDHAP+
Sbjct: 231 CVIDKVPRKWEQPSDHAPV 249


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 814,386
Number of extensions: 32144
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)