BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0202.0007.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 358 e-100 gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 183 2e-47 gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase ... 119 2e-28 gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ... 85 6e-18 gi|300313072|ref|YP_003777164.1| high-affinity K+ transport syst... 56 3e-09 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 358 bits (920), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/248 (78%), Positives = 215/248 (86%), Gaps = 1/248 (0%) Query: 1 VVIVLFTLAEMIESLSLDRARNAIAGLMAMTPDQATVL-QDGAWIGVAAKQVALNAEVRV 59 VVIVLFTLAEMIE+LSLDRARNAIAGL+AMTPD AT +DG W V A+ V ++ VRV Sbjct: 235 VVIVLFTLAEMIEALSLDRARNAIAGLLAMTPDMATRRGEDGVWSTVPARTVTVDDTVRV 294 Query: 60 KPGERVPLDGVVTAGQPAINQAPITGESMPVAKQTGDQVFAGTINGQTAFDYRVTAVQSE 119 PGERVPLDG+V +G +INQAPITGES+PV KQ GD VFAGTIN Q AF+ RVTA Q + Sbjct: 295 APGERVPLDGLVLSGSTSINQAPITGESIPVQKQAGDPVFAGTINEQGAFEMRVTAAQGD 354 Query: 120 STLSRIVKSVQQAQGQRAPTQRFVDQFARYYIPAVVAVAVLVAVLPPLLFNVPFYPWLYK 179 STL+RIVKSVQQAQGQRAPTQRFVD FARYYIPAVV +AVLVA+LPPLL F PWLYK Sbjct: 355 STLARIVKSVQQAQGQRAPTQRFVDNFARYYIPAVVVMAVLVALLPPLLAGAAFQPWLYK 414 Query: 180 ALVLLVIACPCALVISTPVTIVSGLAAAARHGILIKGGVYLEQGRRLKALALDKTGTITH 239 ALVLLVIACPCALVISTPVTIVSGLA+AARHGIL+KGGVYLEQGR+L+ALALDKTGT+T Sbjct: 415 ALVLLVIACPCALVISTPVTIVSGLASAARHGILVKGGVYLEQGRQLRALALDKTGTLTF 474 Query: 240 GKPVVTDV 247 GKP VTDV Sbjct: 475 GKPRVTDV 482 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 183 bits (464), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 106/248 (42%), Positives = 157/248 (63%), Gaps = 1/248 (0%) Query: 1 VVIVLFTLAEMIESLSLDRARNAIAGLMAMTPDQATVLQDGAWIGVAAKQVALNAEVRVK 60 VVI L L + +E + + +AIA L A+ P+ A V +DG I V QV + V ++ Sbjct: 197 VVITLVLLGKWLEGRAKRQTADAIAALNALRPENARVRRDGQDIEVPLAQVRVGDLVVLR 256 Query: 61 PGERVPLDGVVTAGQPAINQAPITGESMPVAKQTGDQVFAGTINGQTAFDYRVTAVQSES 120 PGERVP+DGVV G+ +++A +TGES P AKQ GD + AG+IN + TA+ +E+ Sbjct: 257 PGERVPVDGVVREGRSHLDEAMLTGESRPQAKQAGDPLTAGSINAEGVLVMETTAIGAET 316 Query: 121 TLSRIVKSVQQAQGQRAPTQRFVDQFARYYIPAVVAVAVLVAVLPPLLFNVPFYPWLYKA 180 L+RIV+ V+QAQ +AP QR VDQ + ++PAV+ +++L + L+ + L A Sbjct: 317 VLARIVRMVEQAQAAKAPIQRLVDQVSAVFVPAVLLLSLLTLLGWGLVQG-NWEQALLNA 375 Query: 181 LVLLVIACPCALVISTPVTIVSGLAAAARHGILIKGGVYLEQGRRLKALALDKTGTITHG 240 + ++VIACPCAL ++TP I++G AARHGILIK LE R+ A+A DKTGT+T G Sbjct: 376 VAVMVIACPCALGLATPTAIMAGTGVAARHGILIKDAEALEIAHRVNAVAFDKTGTLTLG 435 Query: 241 KPVVTDVQ 248 P + +++ Sbjct: 436 HPRLLELE 443 >gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 734 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 134/246 (54%), Gaps = 20/246 (8%) Query: 1 VVIVLFTLAEMIESLSLDRARNAIAGLMAMTPDQATVLQDGAWIGVAAKQVALNAEVRVK 60 V+ ++F +ES++ RA+ ++ L+ P A + + + V + V+ Sbjct: 59 VIALMFAGGRALESVAQRRAQQEMSALLGKAPHVANRYEGERIVTIGLNLVRPGDRLLVR 118 Query: 61 PGERVPLDGVVTAGQPAINQAPITGESMPVAKQTGDQVFAGTINGQTAFDYRVTAVQSES 120 PGE VP+DG + G ++++ +TGES+PV+ G + +G +N AFD T+ S Sbjct: 119 PGEPVPVDGRLL-GPAVVDESMLTGESLPVSHPQGATLASGCVNAGNAFDLLATSTDQSS 177 Query: 121 TLSRIVKSVQQAQGQRAPTQRFVDQFARYYIPAVVAVAVLVAVLPPLLFNVPFYPWLY-- 178 T +++++ VQ AQ +AP R D++A +IP V+A+A L WL Sbjct: 178 TFAQVLRLVQAAQASQAPAARMADRYALLFIPLVLAMAAL--------------SWLLTG 223 Query: 179 ---KALVLLVIACPCALVISTPVTIVSGLAAAARHGILIKGGVYLEQGRRLKALALDKTG 235 +AL ++V+A PC L+++ PV IV ++ A+ G+LIK G LE+ +++ L DKTG Sbjct: 224 DPRRALAVVVVATPCPLILAVPVAIVCAMSRCAQRGVLIKHGGALEKLAQVRTLFFDKTG 283 Query: 236 TITHGK 241 T+T GK Sbjct: 284 TLTAGK 289 >gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 839 Score = 85.1 bits (209), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 19/208 (9%) Query: 46 VAAKQVALNAEVRVKPGERVPLDGVVTAGQPAINQAPITGESMPVAKQTGDQVFAGTING 105 V A Q+ + +PG+ + D + G + A ++GES P + Q G + G +N Sbjct: 337 VVAAQLREGDVILARPGDTIAADACLLEGAGEFDLALLSGESRPQSFQIGQEAPGGAVNL 396 Query: 106 QTAFDYRVTAVQSESTLSRIVKSVQQAQGQRAPTQRFVDQFARYYIPAVVAVAVLVAVLP 165 RV ESTL+ + + +QA GQ P + Q+A VVA +VA+L Sbjct: 397 SQPVFLRVVRATGESTLAALTRLAEQA-GQGKPA---LAQWAD-----VVASRFVVALL- 446 Query: 166 PLLFNVPFYPW--------LYKALVLLVIACPCALVISTPVTIVSGLAAAARHGILIKGG 217 LL F W A+ +LV++CPCAL ++TP + + R G LI G Sbjct: 447 -LLAGATFLAWQLIDPTRAWSTAIAVLVVSCPCALSLATPSALAAATDRLLRAGTLIVRG 505 Query: 218 VYLEQGRRLKALALDKTGTITHGKPVVT 245 LE +R + DKTGT+T G+P +T Sbjct: 506 NVLETLQRADTIVFDKTGTLTQGRPQLT 533 >gi|300313072|ref|YP_003777164.1| high-affinity K+ transport system ATPase [Herbaspirillum seropedicae SmR1] Length = 730 Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 10/193 (5%) Query: 57 VRVKPGERVPLDGVVTAGQPAINQAPITGESMPVAKQTGDQVFAGTINGQTAFDY---RV 113 V ++ G+ VP D V G ++++ ITGES PV +++G A T + D+ RV Sbjct: 162 VLIEAGDTVPADAEVIEGVATVDESAITGESAPVIRESGGDFSAVTGGTRVLSDWIVVRV 221 Query: 114 TAVQSESTLSRIVKSVQQAQGQRAPTQRFVDQFARYYIPAVVAVAVLVAVLPPLLFNV-- 171 + E+ L R++ V+ A+ Q+ P + + +V + V V +LP +F+V Sbjct: 222 SVNPGEAFLDRMIAMVEGARRQKTPNE--LALTLLLVALTLVFLLVTVTLLPFSIFSVNA 279 Query: 172 --PFYPWLYKALV-LLVIACPCALVISTPVTIVSGLAAAARHGILIKGGVYLEQGRRLKA 228 P AL+ LLV P + V+G++ + ++ G +E + Sbjct: 280 AGSGSPVSVTALIALLVCLIPTTIGGLLSAIGVAGMSRMMQANVIATSGRAVEAAGDVDV 339 Query: 229 LALDKTGTITHGK 241 L LDKTGTIT G Sbjct: 340 LLLDKTGTITLGN 352 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 759,909 Number of extensions: 29060 Number of successful extensions: 129 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 6 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)