BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0202.0005.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310934|ref|YP_003775026.1| Pb-specific transcription regul...   177   4e-46
gi|300310936|ref|YP_003775028.1| transcription regulator protein...    63   1e-11

>gi|300310934|ref|YP_003775026.1| Pb-specific transcription
          regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score =  177 bits (448), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 82/98 (83%), Positives = 90/98 (91%)

Query: 1  MDALKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDAHVERLQFIRHCRSLD 60
          MD LKIGELAA+ DCPVET+RYYE+EALLP PTRSQ NYRLYG+ HVERLQFIRHCRSLD
Sbjct: 1  MDTLKIGELAAKADCPVETVRYYEKEALLPEPTRSQANYRLYGERHVERLQFIRHCRSLD 60

Query: 61 MTLDEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRI 98
          MTLDEVR LL+ RDAPE++CG VNALLDKHIGHVA+RI
Sbjct: 61 MTLDEVRELLRLRDAPEQDCGGVNALLDKHIGHVAERI 98


>gi|300310936|ref|YP_003775028.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score = 62.8 bits (151), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%)

Query: 4   LKIGELAARTDCPVETIRYYEREALLPAPTRSQGNYRLYGDAHVERLQFIRHCRSLDMTL 63
           + IGE A+ +    + IR+YE   L+P  +R+   YR+YG   V  L+FIR  R L  ++
Sbjct: 1   MNIGEAASASGVSAKMIRHYEETGLIPRASRTDAGYRVYGQRDVHLLRFIRQARQLGFSM 60

Query: 64  DEVRSLLQFRDAPEENCGEVNALLDKHIGHVAQRIAELK 102
            +V  L+           +V  L   HI  + QRI+EL+
Sbjct: 61  AQVSDLIGLWLDQSRPSRKVKQLAQTHIAELEQRISELQ 99


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 345,802
Number of extensions: 11434
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)