BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0202.0003.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311737|ref|YP_003775829.1| oxidoreductase domain-containin...    80   1e-16
gi|300311736|ref|YP_003775828.1| myo-inositol 2-dehydrogenase [H...    71   8e-14
gi|300313480|ref|YP_003777572.1| dehydrogenase [Herbaspirillum s...    70   2e-13

>gi|300311737|ref|YP_003775829.1| oxidoreductase domain-containing
           protein [Herbaspirillum seropedicae SmR1]
          Length = 341

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 108/231 (46%), Gaps = 15/231 (6%)

Query: 6   PDTIRWGIIGCGAVTERKSGPAYQQTPGFALHAVMRRDAAKAADYARRH-GVARYYDDAD 64
           P +++ G++G G +  R +      TPG  L AV     A+  D+A++H   A  Y+D  
Sbjct: 4   PASLQVGLVGLGRMGRRHAENIAFNTPGATLCAVCS-PLAQERDWAQQHLPSAERYEDYQ 62

Query: 65  ALIADPDVDAVYIATPPDTHLLYALKVAAANKPCCIEKPMAPTFAECEAIYT-AFESRGL 123
           AL+  P +DAV++ TP   H    +    A K    EKP++    EC+ +   A     L
Sbjct: 63  ALLRHPGLDAVFLVTPTALHGEQIIAALRAGKHVFCEKPLSLDLEECQRVAAEAARHPQL 122

Query: 124 PLFVAYYRRSLPRFAQVKRWLDEGRIGSPRHVGWQFSRTPSPLDLSRAYNWRTDAAIAAG 183
            + + + RR    +    R + EG IG+P  V   +S+T   LD      +    A ++G
Sbjct: 123 KVMIGFVRRFDASYQDAHRKISEGLIGAPFMV---YSQTADALDPD---GFFVRFAASSG 176

Query: 184 GYFDDLASHGIDLFAYLLG-----EVMQASGCSANQQELYSAADTVSGAWL 229
           G F D + H IDL  +LLG      VM ASG  A   EL +  D  +G  +
Sbjct: 177 GLFLDCSVHDIDLARWLLGADQPVRVM-ASGVRAVHHELEAFQDIDNGVAI 226


>gi|300311736|ref|YP_003775828.1| myo-inositol 2-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score = 71.2 bits (173), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 12/195 (6%)

Query: 9   IRWGIIGCGAVTERKSGPAYQQTPGFALHAVMRRDAAKAADYARRHGVARYYDDADALIA 68
           I   I G G + +  +     Q  G  L  V    A  AA+ A+RHG        + ++ 
Sbjct: 2   IDVAIFGAGRIGKIHAANIAAQA-GVRLKYVCDVHAESAAELAQRHGA--QVGRVEQVLD 58

Query: 69  DPDVDAVYIATPPDTHLLYALKVAAANKPCCIEKPMAPTFAECEAIYTAFESRGLPLFVA 128
           D  V AV IA+  DTH    L+ AAA K    EKP+       +A   A  + G+   + 
Sbjct: 59  DSSVAAVVIASSTDTHADLILRAAAAGKAIFCEKPVDLDLQRAQACAEAVRAAGVTCMIG 118

Query: 129 YYRRSLPRFAQVKRWLDEGRIGSPRHVGWQFSRTPSPLDLSRAYNWRTDAAIAAGGYFDD 188
           + RR  P F  + R L+ G IG P  +    SR P    LS   +        +GG F D
Sbjct: 119 FQRRFDPTFESLSRRLEAGEIGDPEML-LVTSRDPGAPPLSYIAS--------SGGIFKD 169

Query: 189 LASHGIDLFAYLLGE 203
           +  H  D+F ++L +
Sbjct: 170 MLIHDFDIFRWILAD 184


>gi|300313480|ref|YP_003777572.1| dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 352

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 10/213 (4%)

Query: 9   IRWGIIGCGAVTERKSGPAYQQTPGFALHAVMRRDAAKAADYARRHGVARYYDDADALIA 68
           IR GI+GCG +++   G   +      L A+   D    A++A ++ V  Y    + ++ 
Sbjct: 12  IRIGIVGCGRISKNHFGSIEKHADEMELIAICDIDPVTLAEHAEKYNVPAY-STMEEMLE 70

Query: 69  DPDVDAVYIATPPDTHLLYALKVAAANKPCCIEKPMAPTFAECEAIYTAFESRGLPLFVA 128
              +D V + TP  +H    +  A        EKPMA  + +   +  A +  G+ LFV 
Sbjct: 71  KEQLDLVALCTPSGSHPEQTVLAAKHRIHVMTEKPMATRWKDGVRMVKACDEAGVHLFVV 130

Query: 129 YYRRSLPRFAQVKRWLDEGRIGSPR--HVGWQFSRTPSPLDLSRAY--NWRTDAAIAAGG 184
              R       +KR + E R G     H+   ++R  S  D    +   W  D     GG
Sbjct: 131 KQNRRNTTLQLLKRAVTEKRFGKIHMVHLNVFWTRPQSYYDQGNGWRGTWEFD-----GG 185

Query: 185 YFDDLASHGIDLFAYLLGEVMQASGCSANQQEL 217
            F + ASH +DL  +L+G V +     +  +++
Sbjct: 186 AFMNQASHYVDLLDWLIGPVEKVQAMMSTTRDI 218


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 906,793
Number of extensions: 37463
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 3
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)