BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0202.0001.p
         (82 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ...   129   5e-32
gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ...    54   2e-09

>gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 744

 Score =  129 bits (324), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 63/67 (94%)

Query: 1   MSTGTDVAMQAAGITLMRGDPSLVADAIDISRRTYGKIRQNLFWAFIYNIVGIPLAAFGL 60
           MSTGTDVAMQAAG+TLM GDP LVADAIDISRRTY KIRQNLFWAFIYN+VGIPLAA GL
Sbjct: 648 MSTGTDVAMQAAGVTLMHGDPGLVADAIDISRRTYAKIRQNLFWAFIYNLVGIPLAALGL 707

Query: 61  LNPMIAG 67
           LNPM+AG
Sbjct: 708 LNPMLAG 714


>gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 839

 Score = 53.9 bits (128), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query: 1   MSTGTDVAMQAAGITLMRGDPSLVADAIDISRRTYGKIRQNLFWAFIYNIVGIPLAAFGL 60
           M  G  +A  +A   +M      VAD   +++RT   +RQNL WA  YN + IP AAFGL
Sbjct: 732 MGKGAALAQVSADAVIMSDRLQAVADCAAMAQRTMHIVRQNLVWAATYNFLAIPAAAFGL 791

Query: 61  LNPMIAG 67
           L+P ++ 
Sbjct: 792 LDPWMSA 798


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 274,084
Number of extensions: 9851
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 2
Length of query: 82
Length of database: 1,619,870
Length adjustment: 53
Effective length of query: 29
Effective length of database: 1,368,915
Effective search space: 39698535
Effective search space used: 39698535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)