BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0024.p
         (113 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309741|ref|YP_003773833.1| periplasmic protein TonB, links...   182   4e-48

>gi|300309741|ref|YP_003773833.1| periplasmic protein TonB, links
           inner and outer membranes [Herbaspirillum seropedicae
           SmR1]
          Length = 307

 Score =  182 bits (463), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 97/110 (88%), Gaps = 1/110 (0%)

Query: 2   YYKALQEKIEKIGTLNFPQKDGKKLYGELVIYIPVYQDGSIYDKEGGVRVERSSGNLALD 61
           YYK LQ+KIEK+GTLNFP KDGKKLYGEL+I IPV+QDGSIY+++GGV V+ SSGN ALD
Sbjct: 198 YYKTLQDKIEKVGTLNFPTKDGKKLYGELLIVIPVFQDGSIYERDGGVVVKSSSGNAALD 257

Query: 62  AAALTIVRRSAPFGRFPDNMRTTGGKDDIWEVITRFRFTRDETLQTDLSG 111
            AA+ IVRRSAPFGRFPDNMR TGG+DD+WE+ITRFRFTRD+ LQ  L G
Sbjct: 258 QAAVAIVRRSAPFGRFPDNMR-TGGRDDVWEIITRFRFTRDQGLQAQLGG 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 361,246
Number of extensions: 13987
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 40
Effective length of database: 1,274,215
Effective search space: 50968600
Effective search space used: 50968600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)