BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0022.p
         (410 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309740|ref|YP_003773832.1| exoribonuclease R protein [Herb...   325   4e-90
gi|300309739|ref|YP_003773831.1| 4-hydroxybenzoate synthetase [H...   140   2e-34

>gi|300309740|ref|YP_003773832.1| exoribonuclease R protein
           [Herbaspirillum seropedicae SmR1]
          Length = 684

 Score =  325 bits (833), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 165/208 (79%), Positives = 176/208 (84%), Gaps = 3/208 (1%)

Query: 164 GSVMLVTDVFLGXGHAPLPHEAAGLLLRLHSAPIYFYKKGKGRYKAAPLASLQAAQAGLE 223
           G   L TD F   GHAPLP EAAGLLLRLH+APIYFYKKG+GRYKAAP ASLQAA AGLE
Sbjct: 79  GFTELATDYF---GHAPLPPEAAGLLLRLHNAPIYFYKKGRGRYKAAPQASLQAALAGLE 135

Query: 224 KKKQQALVQAQYVDELKAGKLPDAFKPLALSLLFRPDKNGIEFKALDAACKELQTTPQRL 283
           KKKQQ L QA YVDELKA KLP AF P+AL LLF+PDKN IEFKALDAA KE+QTTPQRL
Sbjct: 136 KKKQQLLAQAAYVDELKAHKLPQAFAPIALQLLFKPDKNSIEFKALDAAAKEMQTTPQRL 195

Query: 284 MLQTGGLASPKDLHYAKFLFEFFPKGSGFPDVTIPAVPKDLPLADVQAFSIDDVTTTEID 343
           ML  GG+ASPKDLHYA+FLFE FP+G+GFP + IPA P DLP ADVQAFSIDDVTTTEID
Sbjct: 196 MLAAGGVASPKDLHYARFLFEHFPRGTGFPAIDIPAPPTDLPTADVQAFSIDDVTTTEID 255

Query: 344 DALSVVRLADGNVRVGIHIAAPGLGIKR 371
           DALSV RL DG +RVGIHIAAPGL IKR
Sbjct: 256 DALSVTRLPDGKLRVGIHIAAPGLAIKR 283


>gi|300309739|ref|YP_003773831.1| 4-hydroxybenzoate synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 100/149 (67%), Gaps = 5/149 (3%)

Query: 27  LRLRXRARCNELRVLRLRQRPGNAQADEAGFVGLATPRQPVEERDVILYCDGEPVIFGHT 86
           + L+ +AR     V  LRQRPG   ADE   +G+   R  V ERDVIL+CDG+PV+FGHT
Sbjct: 41  MTLKLKARTAHFTVRLLRQRPGPILADEHAALGVPA-RSRVVERDVILHCDGQPVVFGHT 99

Query: 87  VTPLASA-SAWPFFRRLGVRPLGASLFSDPLVTRAPLQYARLHANHPLVRRIGAVIDLHS 145
           V   AS  S WPFF +LG  PLGA+LF DPLV R+P+QYARL A+HPL+RRI   +    
Sbjct: 100 VLSTASVKSDWPFFSKLGNTPLGANLFFDPLVGRSPIQYARLAADHPLMRRI---VQALP 156

Query: 146 MLPPQLPLYARRSLFRRHGSVMLVTDVFL 174
            LP    L ARRSLF R G V++VTDVFL
Sbjct: 157 GLPLPPSLLARRSLFTRRGGVLMVTDVFL 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,334,195
Number of extensions: 58078
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,207,925
Effective search space: 390159775
Effective search space used: 390159775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 132 (55.5 bits)