BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0019.p
         (528 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309737|ref|YP_003773829.1| UDP-N-acetylmuramate:L-alanyl-g...   650   0.0  
gi|300309679|ref|YP_003773771.1| UDP-N-acetylmuramate-L-alanine ...    77   3e-15

>gi|300309737|ref|YP_003773829.1|
           UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/420 (77%), Positives = 352/420 (83%), Gaps = 30/420 (7%)

Query: 1   MHIHILGICGTFMGGLAVLAKEAGHKVTGCDANVYPPMSTQLEAQGIELIQGFDPGQVQL 60
           MHIHILGICGTFMGGLAVLAKEAGH VTGCDANVYPPMSTQLEAQGI L QGFD  QV+L
Sbjct: 1   MHIHILGICGTFMGGLAVLAKEAGHTVTGCDANVYPPMSTQLEAQGITLTQGFDAAQVEL 60

Query: 61  QPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPEWMGNHILRDKWVLAVAGTHGKTTTSAM 120
           +PDLFVIGNVVSRGNPLMEEILNRGLPYVSGP+WMG +IL+DKWVLAVAGTHGKTTTSAM
Sbjct: 61  EPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPQWMGENILQDKWVLAVAGTHGKTTTSAM 120

Query: 121 LAWILEDAGYAPGFLIGGVPMNFGISARLSGVRNGKKADSVFFVIEADEYDTAFFDKRSK 180
           LAW+LE AGY PGFLIGGVPMNFG+SARL    +G+   + FFVIEADEYDTAFFDKRSK
Sbjct: 121 LAWVLEHAGYQPGFLIGGVPMNFGVSARLG--SDGQGGPAPFFVIEADEYDTAFFDKRSK 178

Query: 181 FVHYHARTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRLVVNGREPALERVIAR 240
           FVHY  RTA+LNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRL+VNGREPAL+RV+AR
Sbjct: 179 FVHYRTRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRLIVNGREPALQRVLAR 238

Query: 241 GCWSEHENFGVESGQAGWSLDTHDDGSFDIGFDGVPQGTVSWSLTGEHNRMN-------- 292
           GCWSE E+FGV  GQ+GWSL TH+DG FD+ FDG  QGTV W LTGEHNRMN        
Sbjct: 239 GCWSEREDFGVAQGQSGWSLLTHEDGRFDVFFDGQTQGTVEWQLTGEHNRMNALAAIAAA 298

Query: 293 ---------ALAAIAP-------XELRGTVNGIAVYDDFAHHPTAITTTVAGLRKKIGKD 336
                    A+AA+          ELRG+ NG+AVYDDFAHHPTAI TTVAGLRKK+   
Sbjct: 299 RHVGVPVAQAIAALGAFQSVKRRMELRGSANGVAVYDDFAHHPTAIATTVAGLRKKV--- 355

Query: 337 GGGRILAVLEPRSNTMKLGTMKDALPASLADADLVFGYGAKGDGKEALGWDLAQALSPLG 396
           G  RILAVLEPRSNTMKLGTMK ALP SLADADLVFG+GA   G++ALGWDL +AL+PLG
Sbjct: 356 GAARILAVLEPRSNTMKLGTMKQALPGSLADADLVFGFGAH-TGRDALGWDLGEALAPLG 414


>gi|300309679|ref|YP_003773771.1| UDP-N-acetylmuramate-L-alanine
           ligase [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 110/244 (45%), Gaps = 29/244 (11%)

Query: 63  DLFVIGNVVSRGNPLMEEILNRGLPYVSGPEWMGNHILRDKWVLAVAGTHGKTTTSAMLA 122
           D  V    V   NP +     + +P V     +G  ++R K  +A+AGTHGKTTT++++A
Sbjct: 66  DAIVTSTAVKGDNPEVLAARKKHIPIVPRAVMLGE-LMRLKKGIAIAGTHGKTTTTSLVA 124

Query: 123 WILEDAGYAPGFLIGGVPMNFGISARLSGVRNGKKADSVFFVIEADEYDTAFFDKRSKFV 182
            +L   G  P F+IGG   + G +A+L     G+     F V EADE D +F +      
Sbjct: 125 SVLAQGGLDPTFVIGGRLTSAGANAKLG---TGE-----FIVAEADESDASFLNLTPVI- 175

Query: 183 HYHARTAILNNLEYDHADIFP-DLAAIETQFHHLVRTVPGIGRLVVNGREPALERVIARG 241
                  ++ N++ DH + +  D A ++  F    + +P  G  V+   +P +  ++   
Sbjct: 176 ------EVITNIDADHMETYNHDFARLKQAFVEFTQRLPFYGVAVLCLDDPHVREIMPMV 229

Query: 242 -----CWSEHENFGVESGQAGWSLDTHDDG--SFDIGFDGVPQGTVSWSLTGEHNRMNAL 294
                 +  HE+  V +  A        DG   F +  DG     VS +  G HN  NA 
Sbjct: 230 SKPILTYGFHEDADVRAIDAKAV-----DGKMEFTVIQDGYAPMQVSLNQPGMHNVQNAC 284

Query: 295 AAIA 298
           AAIA
Sbjct: 285 AAIA 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,730,864
Number of extensions: 76252
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 2
Length of query: 528
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 438
Effective length of database: 1,193,720
Effective search space: 522849360
Effective search space used: 522849360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)