BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0015.p
         (70 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309730|ref|YP_003773822.1| biotin carboxyl carrier protein...   135   5e-34
gi|300313398|ref|YP_003777490.1| biotin carboxyl carrier protein...    60   2e-11

>gi|300309730|ref|YP_003773822.1| biotin carboxyl carrier protein of
           acetyl-CoA carboxylase (BCCP)protein [Herbaspirillum
           seropedicae SmR1]
          Length = 157

 Score =  135 bits (341), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 64/70 (91%), Positives = 68/70 (97%)

Query: 1   MVGTFYRSSAPGAPAFVEVGKEVKEGETICIIEAMKLLNEIDADKAGVIKQILVENGQPV 60
           MVGTFYRSSAPGAPAFVEVGKEVKEG+T+CIIEAMKLLNEID DK GV+KQILVENGQPV
Sbjct: 88  MVGTFYRSSAPGAPAFVEVGKEVKEGDTLCIIEAMKLLNEIDTDKGGVVKQILVENGQPV 147

Query: 61  EFGQPLFVIG 70
           EFGQPLFV+G
Sbjct: 148 EFGQPLFVLG 157


>gi|300313398|ref|YP_003777490.1| biotin carboxyl carrier protein
          [Herbaspirillum seropedicae SmR1]
          Length = 82

 Score = 60.5 bits (145), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query: 1  MVGTFYRSSAPGAPAFVEVGKEVKEGETICIIEAMKLLNEIDADKAGVIKQILVENGQPV 60
          + GTFYR S+P AP + E G+ ++ G  I +IE MK   E+ A+  G ++   V NG PV
Sbjct: 10 LPGTFYRRSSPDAPPYAEAGELIEAGRVIGLIEVMKQFTELQAEHGGKLQAFHVGNGDPV 69

Query: 61 EFGQPLFVI 69
          E GQ + VI
Sbjct: 70 EPGQLVAVI 78


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 199,333
Number of extensions: 5088
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 2
Length of query: 70
Length of database: 1,619,870
Length adjustment: 42
Effective length of query: 28
Effective length of database: 1,421,000
Effective search space: 39788000
Effective search space used: 39788000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)