BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0013.p
         (83 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspiril...   157   2e-40
gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylas...    85   9e-19
gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin sub...    71   1e-14
gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum...    69   9e-14

>gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspirillum
           seropedicae SmR1]
          Length = 459

 Score =  157 bits (396), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%)

Query: 1   VVHTEAALINAVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDC 60
           VVHTEAALINAVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDC
Sbjct: 171 VVHTEAALINAVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDC 230

Query: 61  SMQRRHQKVIEEAP 74
           SMQRRHQKVIEEAP
Sbjct: 231 SMQRRHQKVIEEAP 244


>gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylase
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 671

 Score = 85.1 bits (209), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 48/64 (75%)

Query: 11  AVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDCSMQRRHQKVI 70
           A+   K EA A+FG+  V +EKYL  PRH+EIQ+ AD H   ++L ERDCS+QRRHQKV+
Sbjct: 180 ALASCKREAIASFGDDRVLVEKYLTRPRHIEIQVFADGHGHCVYLFERDCSVQRRHQKVL 239

Query: 71  EEAP 74
           EEAP
Sbjct: 240 EEAP 243


>gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 462

 Score = 71.2 bits (173), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 14  MTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDCSMQRRHQKVIEEA 73
           + + EA AAFG+  VY+E+++   RH+E+QIL D  + A+ L ER+CS+QRR QKV+EEA
Sbjct: 186 LAQAEAQAAFGSAAVYLERFIRRARHIEVQILGDGER-AVHLFERECSLQRRRQKVLEEA 244

Query: 74  P 74
           P
Sbjct: 245 P 245


>gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum
           seropedicae SmR1]
          Length = 1207

 Score = 68.6 bits (166), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%)

Query: 1   VVHTEAALINAVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDC 60
           V  ++A L +A    +      F +  V++EKY+E  RH+E+Q+  D   + I LG RDC
Sbjct: 169 VCRSDAELADAFDSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGRGEVIALGVRDC 228

Query: 61  SMQRRHQKVIEEAP 74
           S+QRR+QKV+EE P
Sbjct: 229 SVQRRNQKVLEETP 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 235,190
Number of extensions: 7187
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 4
Length of query: 83
Length of database: 1,619,870
Length adjustment: 54
Effective length of query: 29
Effective length of database: 1,364,180
Effective search space: 39561220
Effective search space used: 39561220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)