BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0201.0012.p (193 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspiril... 371 e-104 gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin sub... 177 4e-46 gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylas... 141 3e-35 gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum... 120 7e-29 >gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 371 bits (952), Expect = e-104, Method: Compositional matrix adjust. Identities = 175/182 (96%), Positives = 179/182 (98%) Query: 1 MNYRGAGTFEFLYENEEFYFIEMNTRVQVEHPVTEMITGVDIVQEQIRIAFGEKLRYRQR 60 MNYRGAGTFEFLYENEEFYFIEMNTRVQVEHPVTEMITGVDIVQEQIRIA GEKLRYRQR Sbjct: 267 MNYRGAGTFEFLYENEEFYFIEMNTRVQVEHPVTEMITGVDIVQEQIRIAAGEKLRYRQR 326 Query: 61 DIELKGHAIECRINAEDPFKFTPSPGRLTAWHVPGGPGIRVDSHAYAGYFVPPNYDSMVG 120 DIELKGHAIECRINAEDPFKF PSPGR+TAWHVPGGPGIRVDSHAY+GYFVPPNYDSMVG Sbjct: 327 DIELKGHAIECRINAEDPFKFIPSPGRITAWHVPGGPGIRVDSHAYSGYFVPPNYDSMVG 386 Query: 121 KVISYGSTREQAIRRMQIALSEMVVEGISTNIPLHRELMVDARFIEGGTNIHYLEHKLSE 180 KVI+YG+TREQAIRRMQIALSEMVVEGISTNIPLHRELMVDARF EGGTNIHYLEHKLSE Sbjct: 387 KVIAYGATREQAIRRMQIALSEMVVEGISTNIPLHRELMVDARFFEGGTNIHYLEHKLSE 446 Query: 181 RP 182 RP Sbjct: 447 RP 448 >gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin subunit [Herbaspirillum seropedicae SmR1] Length = 462 Score = 177 bits (450), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 96/188 (51%), Positives = 129/188 (68%), Gaps = 3/188 (1%) Query: 1 MNYRGAGTFEFLYENE--EFYFIEMNTRVQVEHPVTEMITGVDIVQEQIRIAFGEKLRYR 58 ++YRGAGT E+L+++E EF+FIEMNTR+QVEHPVTEMITG+D+VQ +RIA GE L + Sbjct: 268 LHYRGAGTLEYLFDDESGEFFFIEMNTRIQVEHPVTEMITGIDLVQAMLRIAGGEPLGLQ 327 Query: 59 QRDIELKGHAIECRINAEDPFK-FTPSPGRLTAWHVPGGPGIRVDSHAYAGYFVPPNYDS 117 Q DI ++G A+E RINAEDP + F P PG + P G GIRV+SH YAGY +PP YDS Sbjct: 328 QSDIRMQGAALEMRINAEDPERNFFPCPGTVAELQWPQGEGIRVESHLYAGYRIPPYYDS 387 Query: 118 MVGKVISYGSTREQAIRRMQIALSEMVVEGISTNIPLHRELMVDARFIEGGTNIHYLEHK 177 ++ K++ +G R QAI R Q A+ + G++T + LH+ L+ DAR + LE Sbjct: 388 LLAKLVVHGKDRAQAIARAQAAVLATRITGMATTLSLHQWLLADARVQSARFDTGALETW 447 Query: 178 LSERPXKR 185 L+ER R Sbjct: 448 LAERTDTR 455 >gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 671 Score = 141 bits (356), Expect = 3e-35, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 116/206 (56%), Gaps = 23/206 (11%) Query: 3 YRGAGTFEFLYENE-EFYFIEMNTRVQVEHPVTEMITGVDIVQEQIRIAFGEKLRYRQRD 61 Y GAGT EF+ + FYF+EMNTR+QVEHPVTEMITG+D+V+ Q+R+A G+ L +Q Sbjct: 268 YVGAGTVEFIANQDGSFYFMEMNTRLQVEHPVTEMITGLDLVEWQLRVAAGQALPLKQEQ 327 Query: 62 IELKGHAIECRINAEDPFK-FTPSPGRLT------------AWHVPGGPG-IRVDSHAYA 107 + + GHAIE RI AE+P K F P+ G LT PG P +R+D+ Sbjct: 328 LRIHGHAIEARIYAENPEKGFLPAIGTLTRMRSAAAVEFRLGQSAPGDPAHVRIDAGVRE 387 Query: 108 GYFVPPNYDSMVGKVISYGSTREQAIRRMQIALSEMVVEGISTNIPLHRELMVDARFIEG 167 G + P YD M+ K+I +G R+ A+R MQ AL++ V G++TNI + L+ F Sbjct: 388 GDAISPFYDPMIAKLIVWGPDRDAALRNMQRALAQYQVVGLATNIAFLQRLVAGQAFSTA 447 Query: 168 GTNIHYLEHKLSERPXKRRLRRFPTP 193 + +E + R FP P Sbjct: 448 ALDTGLIE--------RHRDTLFPPP 465 >gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae SmR1] Length = 1207 Score = 120 bits (301), Expect = 7e-29, Method: Composition-based stats. Identities = 72/174 (41%), Positives = 106/174 (60%), Gaps = 7/174 (4%) Query: 1 MNYRGAGTFEFLYEN--EEFYFIEMNTRVQVEHPVTEMITGVDIVQEQIRIAFGE--KLR 56 +NYR AGT EF+Y++ +FYF+E+NTR+QVEH VTE + GVD+V+ I +A G+ L Sbjct: 265 VNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVTEQVWGVDLVRWMIELAAGDLPPLA 324 Query: 57 YRQRDIELKGHAIECRINAEDPFK-FTPSPGRLTAWHVP--GGPGIRVDSHAYAGYFVPP 113 ++ +GHAI+ R+ AEDP + F P PG LTA P G +R+D+ AG + P Sbjct: 325 QLAAGLQPRGHAIQARLYAEDPGRQFQPCPGLLTAVDFPPVDGQALRIDTWVEAGCEIAP 384 Query: 114 NYDSMVGKVISYGSTREQAIRRMQIALSEMVVEGISTNIPLHRELMVDARFIEG 167 +D M+ K+IS+ TRE A + AL ++ G+ TN R+++ D F G Sbjct: 385 YFDPMIAKLISWQPTREAARLALDAALRATLLYGVETNQHYLRQILADVPFASG 438 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 585,300 Number of extensions: 23172 Number of successful extensions: 50 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 4 Length of query: 193 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 113 Effective length of database: 1,241,070 Effective search space: 140240910 Effective search space used: 140240910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)