BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0011.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309728|ref|YP_003773820.1| 50S ribosomal protein L11 methy...   461   e-131

>gi|300309728|ref|YP_003773820.1| 50S ribosomal protein L11
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  461 bits (1185), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/282 (81%), Positives = 247/282 (87%), Gaps = 1/282 (0%)

Query: 1   LMESGALSVSVEDADEGTVAEQPLFGEPGMEPAEAAWERSRVVALADVDADHAKIVNDAA 60
           LMESGALSVSVEDADEGT AE+PLFGEPGMEP EAAW+RSRVVALA  DADHA IV DAA
Sbjct: 22  LMESGALSVSVEDADEGTDAERPLFGEPGMEPEEAAWDRSRVVALAGKDADHATIVMDAA 81

Query: 61  KAIGLDYALPFALRSVEEQDWVRLTQSQFEPIHIGKRIWVVPSWHDAP-EPDALVLELDP 119
           KAIGLDYALPF+ R VEEQDWVRLTQSQFEPIHIGKRIWVVPSWH+AP +PDALVLELDP
Sbjct: 82  KAIGLDYALPFSTRVVEEQDWVRLTQSQFEPIHIGKRIWVVPSWHEAPADPDALVLELDP 141

Query: 120 GLAFGTGSHPTTRLCMEWLEQYAVNAATVLDYGCGSGILALVAKKLGAQHVIGVDIDPQA 179
           GLAFGTGSHPTTRLCMEWLE  A  A T+LDYGCGSGILALVA K+G   VIGVDIDPQA
Sbjct: 142 GLAFGTGSHPTTRLCMEWLEANATEAGTLLDYGCGSGILALVAAKIGVPQVIGVDIDPQA 201

Query: 180 LESARFNSERNNCEIEYHLPEAFVRNYPENQSFTIVVANILAGPLQLMAPMLAGRVAPGG 239
           LE+A  N+ERN+C   Y+LPE F + +PE + F +VVANILAGPLQLMAPMLAGRV  GG
Sbjct: 202 LEAAHHNTERNHCTATYYLPEPFAQAHPEGERFDVVVANILAGPLQLMAPMLAGRVRAGG 261

Query: 240 SLVLSGVLDRQAQEVIAAYAPYLELSVWAEHEGWVALAGRAP 281
           SLVLSGVL+RQAQEVIA YAPY+ L+VWA HEGWVALAGR P
Sbjct: 262 SLVLSGVLERQAQEVIATYAPYIALNVWAAHEGWVALAGRLP 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 979,503
Number of extensions: 41142
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)