BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0010.p
         (419 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309727|ref|YP_003773819.1| transmembrane protein [Herbaspi...   176   4e-45

>gi|300309727|ref|YP_003773819.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 429

 Score =  176 bits (445), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 126/180 (70%)

Query: 239 EEAGRKKLADAEEEEVEEDEAGSDEDDENDEDAPAFVQKAERRERLGRIARVFMIVGAVV 298
           E+    +  + E +++   +  + +D E+D + P FV++ ERRER GR+ +V M++ A V
Sbjct: 224 EDVHHLRGHEDEPDQLSAADHSAADDSEDDAELPGFVRRVERRERAGRVLKVIMMILAGV 283

Query: 299 LGIALLLQATYVWRNTIAAWLPSTRPLLAAACAPLHCSVGLPTSIDQLVLESSELQLVPP 358
           +   LLLQA Y WRN +A  LP  RP+L   C  LHCSVGLP  ID+L LE++ELQ+VPP
Sbjct: 284 MVPVLLLQALYYWRNPLAEALPPVRPMLNGMCVALHCSVGLPAEIDRLSLEANELQVVPP 343

Query: 359 NQNIYTLSALLRNRSYGAQAWPYLELTLNDGDEKAITRRVFTPREYLGSAKLVXTCLAAN 418
           NQN+Y L+ ++RNR  GAQAWP+LELTLN+ DEKA+ RRVF PR+YL +A+ +   +AA+
Sbjct: 344 NQNVYALTVVMRNRGPGAQAWPHLELTLNNDDEKAVVRRVFRPRDYLPNARQIDRGIAAD 403


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.127    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 811,806
Number of extensions: 22276
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 4
Length of query: 419
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,203,190
Effective search space: 398255890
Effective search space used: 398255890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)