BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0008.p
         (124 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309725|ref|YP_003773817.1| bacterioferritin comigratory pr...   220   2e-59
gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory ox...    57   3e-10

>gi|300309725|ref|YP_003773817.1| bacterioferritin comigratory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  220 bits (561), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 101/124 (81%), Positives = 114/124 (91%)

Query: 1   VVLYFYPAAFTTGCTIEAHLFADAIDRYKALGATVIGVSNDKIETLNKFSVSECRSKFAV 60
           VVLYFYPAAFT+GCTIEAHLFA+A+DRYKALGATVIGVS D IETLNKFSVSECRSKFAV
Sbjct: 71  VVLYFYPAAFTSGCTIEAHLFAEAVDRYKALGATVIGVSGDNIETLNKFSVSECRSKFAV 130

Query: 61  AADTDKKIMKSYDAVMMIKSDYASRTSYVITPDHAILYEYSSMNPDKHVENTLQALQQWA 120
           AAD DKKIMK+YDA  +  + YASRTSYVITPDHAILYEY+ MNP+KHVENT+QAL++W+
Sbjct: 131 AADVDKKIMKAYDAQFLKVTGYASRTSYVITPDHAILYEYTDMNPEKHVENTMQALEKWS 190

Query: 121 AKKK 124
           A +K
Sbjct: 191 AAQK 194


>gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score = 57.4 bits (137), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 1   VVLYFYPAAFTTGCTIEAHLFADAIDRYKALGATVIGVSNDKIETLNKFSVSECRSKFAV 60
           +VLYFYP   T GCT E   F D   +++A    + GVS D +++   F  ++    F +
Sbjct: 35  LVLYFYPKDNTPGCTTEGMQFRDLHAQFQAANTEIFGVSRDSLKSHENFK-AKLGMPFEL 93

Query: 61  AADTDKKIMKSYDAVMMIKSDYA------SRTSYVITPDHAILYEYSSMNPDKHVENTLQ 114
            +D D+ +   +D VM +K+ Y        R+++VI     ++ E+  +    HV+  L 
Sbjct: 94  ISDPDETLCTMFD-VMKMKNMYGKQVRGVERSTFVIDGAGKVVKEWRGVKVPAHVDEVLA 152

Query: 115 ALQQWA 120
            +Q  A
Sbjct: 153 FIQTLA 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 328,341
Number of extensions: 9836
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 2
Length of query: 124
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 50
Effective length of database: 1,269,480
Effective search space: 63474000
Effective search space used: 63474000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)