BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0201.0005.p
         (504 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large ...   958   0.0  

>gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 994

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/511 (88%), Positives = 473/511 (92%), Gaps = 7/511 (1%)

Query: 1   MNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKFGKAFEEAYTGYEAKAARGELKLFK 60
           MNTANWIPDLFMKRVMEKGEWTLFSPSD PDLHDKFG+AFEEAYT YEAKAARGELKLFK
Sbjct: 484 MNTANWIPDLFMKRVMEKGEWTLFSPSDTPDLHDKFGRAFEEAYTAYEAKAARGELKLFK 543

Query: 61  KVQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIA 120
           KVQA DLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTN+SEIA
Sbjct: 544 KVQANDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIA 603

Query: 121 VCNLGSVNLPAHLVNGEIDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGL 180
           VCNLGSVNLPAHLVNGE+DHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVG+
Sbjct: 604 VCNLGSVNLPAHLVNGELDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGM 663

Query: 181 GIMGFQDCLHVKRVPYASADAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGSLWDR 240
           GIMGFQDCLH+KRVPYAS DAVEFADRSMEAVCYYAY ASTELAEERGRY+SYRGSLWDR
Sbjct: 664 GIMGFQDCLHIKRVPYASMDAVEFADRSMEAVCYYAYMASTELAEERGRYASYRGSLWDR 723

Query: 241 GILPQDSLKLLAQERGGYLEADMSETLDWSALRSRISEFGMRNSNCVAIAPTATISNIIG 300
           GILPQDSLKLLAQERGGYLE D +ETLDW+ALR+RI+E GMRNSNCVAIAPTATISNIIG
Sbjct: 724 GILPQDSLKLLAQERGGYLETDSTETLDWAALRARIAEHGMRNSNCVAIAPTATISNIIG 783

Query: 301 VSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMISDLKYFDGSLAKIDRI 360
           VSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVM++DLKYFDGSLAKIDRI
Sbjct: 784 VSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMVADLKYFDGSLAKIDRI 843

Query: 361 PQDLRDIYATAFEVEPSWLVEAASRRQKWIDQAQSLNIYMAGASGKRLDETYKLAWLRGL 420
           PQDLRDIYATAFEV+PSWLVEAASRRQKWIDQAQSLNIYMAGASGKRLDETYKLAWLRGL
Sbjct: 844 PQDLRDIYATAFEVDPSWLVEAASRRQKWIDQAQSLNIYMAGASGKRLDETYKLAWLRGL 903

Query: 421 KTTYYLRTIGATHTEKSTSKTGALNAVAVDGGVSHSAAAASAPTSMTASAAS-------V 473
           KTTYYLRTIGATHTEKSTS+ GALNAVAVDGG    A+A+         A++       V
Sbjct: 904 KTTYYLRTIGATHTEKSTSRAGALNAVAVDGGAGAMASASGTAVPAAPIASAATASAAYV 963

Query: 474 ATVAAAEVEADGAACYLRPGDAGFEECEACQ 504
                A +EADG  C +RPGDAGFEECEACQ
Sbjct: 964 MPNPGAAIEADGPVCTMRPGDAGFEECEACQ 994


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,417,697
Number of extensions: 53679
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 415
Effective length of database: 1,198,455
Effective search space: 497358825
Effective search space used: 497358825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)